Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4353g00003 ATGGAAGTTCAAGTGATAAACGTCGAAGAAGGATGTGGTCATCAAGCTAAGGCAGATGATGGGGATGCAGAACCAAGCGACAGTGATGTTAATAATGCTGAAAACTCTGGATCTCATATTGAGGTTGGGATTTCTGAGCCATATGTGGGTATGGAATTTGATTCCGAAGATGTTGCTAAGACTTTTTATGATGAGTATGCTAGACGCATGGGTTTCATGACTAAAGTTGGCCCGCGTAGTCGCTCTAAAGCTGATGGAGCAAATATGTATCGGGAGTTTGTGTGTGGTAGGGAAGGTTTGAAAAAAAGGTTTAATGATAGTTGTGATGCAATGATTAGGATTGAGTTAAAGGGTCATAATAAGTGGATTTTGACAAAATTTGTGAAGGAGCATGGTCATTCCATGGTGAGTTCAAACAAGGGGCATAACCTTCGGCCACGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGACTTGTTCCAAGTGGTGTCATGTATGTATCTATGGATGGGAATCGCATTTCTACTCAGAATACTCGTGTAATTAGGAATCAAAACAGGACATTGGGAAGGGATGCTCATAATCTGCTTGAGTATTTTAAGAAAATGCAGGCTGAGAACCCTGGTTTCTTCTATGCTATACAACTTGATGAAGAAAATCATATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTCATCTGGACACAACATACAGAGTAAATCAATACAGAGTGCCATTTGCTCCTTTTACTGGGGTAAACCATCATGGTCAGCTGCTTTTGTTTGGTTGTGCACTGCTTTTGGATGACTCTGAGGCATCTTTTTTGTGGCTCTTTAAGACATTTCTGACAGCAATGAATGATCGCCAGCCTGTCTCTATAATTACTGATCAAGACAGAGCAATACAGACAGCAGTTTCACAAGTTTTCCCACAAACTCGCCACTGCATTAGCAGGTGGCATGTCTTGAGAGAAGGCCAGGAAAAGTTGGCCCATGTATGTCTTGCGCATCCAAATTTCCAGGTTGAACTTTATAACTGTATTAACCTGACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATATGAACTCCGAAGAAATGATTGGCTTCAGTCGTTGTATAATGCTCGTGCTCACTGGGTTCCAGCATACTTCCGTGATTCTTTTTTTGCTGCAATATCTCCTAATCAAGGATTTGATGGTTCTTTTTTTGATGGTTATGTCAATCAGCAGACAACATTGCCATTGTTCTTTAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACAATCTGCACAACACCAGTCTTGAAAACACCTTCACCTATGGAGAAACAGGCTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAGGAAGAGCTAGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGGGCAAATAGCACATTCAGGGTTGCAAAATTCGAGGATGTCCAAAAGGCATATATTGTCACATTAAATCATTCTGAGTTGAGAGCTAACTGTAGTTGTCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTTTTAACTGTTTTCACTGTGACAAATGTCCTTACATTACCATCCCATTACATCTTAAAACGGTGGACAAGGAATGCCAAAAACATTTCTGGTTCGGATGAACGTGCTGTTGAATCACACGGACAAGAGTCTCTGACATCTAGATATAGCAATCTATGTCGGGAAGCCATCAGATATGCTGAGGAAGGGGCAATAACTGTGGAAACATATAATGCTGCGATGAGTGGTCTTAGAGAAGGTGGAAAGAAGGTTGCTGCTCTGAAAAGAAGTGTTGCCAAAGTTACACCTCCTAGTAATCAGGCCAGTGGGACTGCTTATGATGACAGGAAAACTGCTGCTTCAACATTTGATACAACTCCTCTTTTGTGGCCACAGCAAGATGAAATAGCAAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTATTCAATCAGTTGCTGATCTAAATTTGCCACGAATGGCCCCAGTATCTCTTCATCGAGATGATGGTCCATCTGAAAACATGGTGGTTCTTCCATGCCTAAAATCAATGACGTGGGTAATGGAGAACAAAAACTCAACTCCGGGGAATAGATTAGCTGTTATCAATTTAAAGTTGCAAGATTATAGCAAGACTCCGTCAACAGAATCTGAGGTTAAGTTTCAGCTCTCAAGAGTATCTTTGGAACCAATGTTGAAGTCTATGGCCTACATCAGTGAACAGCTTTCAACGCCAGCCAATAAAGTTGCTGTAATAAATCTAAAGCTTCAAGATACGGAGACAACTTCTGGTGAGTCTGAAGTAAAGTTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTACGATCAATGGCGTATATCCGTGAACAACTATCTTATGCTGGCGATGCACAGTCGGAACCTGTATTGAAAAAGCATAGGAAGTAA 2571 0.4065 MEVQVINVEEGCGHQAKADDGDAEPSDSDVNNAENSGSHIEVGISEPYVGMEFDSEDVAKTFYDEYARRMGFMTKVGPRSRSKADGANMYREFVCGREGLKKRFNDSCDAMIRIELKGHNKWILTKFVKEHGHSMVSSNKGHNLRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRISTQNTRVIRNQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEENHMSNVFWADARSRTAYSHFGDAVHLDTTYRVNQYRVPFAPFTGVNHHGQLLLFGCALLLDDSEASFLWLFKTFLTAMNDRQPVSIITDQDRAIQTAVSQVFPQTRHCISRWHVLREGQEKLAHVCLAHPNFQVELYNCINLTETIEEFESSWNSILDKYELRRNDWLQSLYNARAHWVPAYFRDSFFAAISPNQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETICTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFVYTANRIEGDGANSTFRVAKFEDVQKAYIVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKNISGSDERAVESHGQESLTSRYSNLCREAIRYAEEGAITVETYNAAMSGLREGGKKVAALKRSVAKVTPPSNQASGTAYDDRKTAASTFDTTPLLWPQQDEIARRFNLNDAGGPIQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWVMENKNSTPGNRLAVINLKLQDYSKTPSTESEVKFQLSRVSLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSYAGDAQSEPVLKKHRK 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4353g00003 856 ProSiteProfiles Zinc finger SWIM-type profile. 528 564 IPR007527 GO:0008270
Gabi4353g00003 856 SMART 26again6 539 566 IPR006564 GO:0008270
Gabi4353g00003 856 MobiDBLite consensus disorder prediction 10 37 - -
Gabi4353g00003 856 Pfam SWIM zinc finger 528 562 IPR007527 GO:0008270
Gabi4353g00003 856 Pfam FAR1 DNA-binding domain 61 136 IPR004330 -
Gabi4353g00003 856 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 640 IPR031052 GO:0006355
Gabi4353g00003 856 Pfam MULE transposase domain 250 341 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4353g00003 Gabi-Chr4353 25407 47413 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4353g00003 MULE 9.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4353g00003 - - gmx:100786516 1495.72