Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4353g00001 ATGGAAGTTCAAGTGATAAACGTCGAAGAAGGATGTGGTCATCAAGCTAAGGCAGATGATGGGGATGCAGAACCAAGCGACAGTGATGTTAATAATGCTGAAAACTCTGGATCTCATATTGAGGTTGGGATTTCTGAGCCATATGTGGGTATGGAATTTGATTCCGAAGATGTTGCTAAGACTTTTTATGATGAGTATGCTAGACGCATGGGTTTCATGACTAAAGTTGGCCCGCGTAGTCGCTCTAAAGCTGATGGAGCAAATATGTATCGGGAGTTTGTGTGTGGTAGGGAAGGTTTGAAAAAAAGGTTTAATGATAGTTGTGATGCAATGATTAGGATTGAGTTAAAGGGTCATAATAAGTGGATTTTGACAAAATTTGTGAAGGAGCATGGTCATTCCATGGTGAGTTCAAACAAGGGGCATAACCTTCGGCCACGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGACTTGTTCCAAGTGGTGTCATGTATGTATCTATGGATGGGAATCGCATTTCTACTCAGAATACTCGTGTAATTAGGAATATTCATGCTTCTGCTGCTGGGGATCCAAGCCACCCAGTTAATAATTCTACATTGATGAATTACACTGTTAGGCCACCTTTTCAAAACAGGACATTGGGAAGGGATGCTCATAATCTGCTTGAGTATTTTAAGAAAATGCAGGCTGAGAACCCTGGTTTCTTCTATGCTATACAACTTGATGAAGAAAATCATATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTCATCTGGACACAACATACAGAGTAAATCAATACAGAGTGCCATTTGCTCCTTTTACTGGGGTAAACCATCATGGTCAGCTGCTTTTGTTTGGTTGTGCACTGCTTTTGGATGACTCTGAGGCATCTTTTTTGTGGCTCTTTAAGACATTTCTGACAGCAATGAATGATCGCCAGCCTGTCTCTATAATTACTGATCAAGACAGAGCAATACAGACAGCAGTTTCACAAGTTTTCCCACAAACTCGCCACTGCATTAGCAGGTGGCATGTCTTGAGAGAAGGCCAGGAAAAGTTGGCCCATGTATGTCTTGCGCATCCAAATTTCCAGGTTGAACTTTATAACTGTATTAACCTGACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATATGAACTCCGAAGAAATGATTGGCTTCAGTCGTTGTATAATGCTCGTGCTCACTGGGTTCCAGCATACTTCCGTGATTCTTTTTTTGCTGCAATATCTCCTAATCAAGGATTTGATGGTTCTTTTTTTGATGGTTATGTCAATCAGCAGACAACATTGCCATTGTTCTTTAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACAATCTGCACAACACCAGTCTTGAAAACACCTTCACCTATGGAGAAACAGGCTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAGGAAGAGCTAGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGGGCAAATAGCACATTCAGGGTTGCAAAATTCGAGGATGTCCAAAAGGCATATATTGTCACATTAAATCATTCTGAGTTGAGAGCTAACTGTAGTTGTCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTTTTAACTGTTTTCACTGTGACAAATGTCCTTACATTACCATCCCATTACATCTTAAAACGGTGGACAAGGAATGCCAAAAACATTTCTGGTTCGGATGAACGTGCTGTTGAATCACACGGACAAGAGTCTCTGACATCTAGATATAGCAATCTATGTCGGGAAGCCATCAGATATGCTGAGGAAGGGGCAATAACTGTGGAAACATATAATGCTGCGATGAGTGGTCTTAGAGAAGGTGGAAAGAAGGTTGCTGCTCTGAAAAGAAGTGTTGCCAAAGTTACACCTCCTAGTAATCAGGCCAGTGGGACTGCTTATGATGACAGGAAAACTGCTGCTTCAACATTTGATACAACTCCTCTTTTGTGGCCACAGCAAGATGAAATAGCAAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTATTCAATCAGTTGCTGATCTAAATTTGCCACGAATGGCCCCAGTATCTCTTCATCGAGATGATGGTCCATCTGAAAACATGGTGGTTCTTCCATGCCTAAAATCAATGACGTGGGTAATGGAGAACAAAAACTCAACTCCGGGGAATAGATTAGCTGTTATCAATTTAAAGTTGCAAGATTATAGCAAGACTCCGTCAACAGAATCTGAGGTTAAGTTTCAGCTCTCAAGAGTATCTTTGGAACCAATGTTGAAGTCTATGGCCTACATCAGTGAACAGCTTTCAACGCCAGCCAATAAAGTTGCTGTAATAAATCTAAAGAAATGGTTGAAAATGTTTCAGCTTCAAGATACGGAGACAACTTCTGGTGAGTCTGAAGTAAAGTTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTACGATCAATGGCGTATATCCGTGAACAACTATCTTATGCTGGCGATGCACAGTCGGAACCTGTATTGAAAAAGCATAGGAAGTAA 2673 0.4059 MEVQVINVEEGCGHQAKADDGDAEPSDSDVNNAENSGSHIEVGISEPYVGMEFDSEDVAKTFYDEYARRMGFMTKVGPRSRSKADGANMYREFVCGREGLKKRFNDSCDAMIRIELKGHNKWILTKFVKEHGHSMVSSNKGHNLRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRISTQNTRVIRNIHASAAGDPSHPVNNSTLMNYTVRPPFQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEENHMSNVFWADARSRTAYSHFGDAVHLDTTYRVNQYRVPFAPFTGVNHHGQLLLFGCALLLDDSEASFLWLFKTFLTAMNDRQPVSIITDQDRAIQTAVSQVFPQTRHCISRWHVLREGQEKLAHVCLAHPNFQVELYNCINLTETIEEFESSWNSILDKYELRRNDWLQSLYNARAHWVPAYFRDSFFAAISPNQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETICTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFVYTANRIEGDGANSTFRVAKFEDVQKAYIVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKNISGSDERAVESHGQESLTSRYSNLCREAIRYAEEGAITVETYNAAMSGLREGGKKVAALKRSVAKVTPPSNQASGTAYDDRKTAASTFDTTPLLWPQQDEIARRFNLNDAGGPIQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWVMENKNSTPGNRLAVINLKLQDYSKTPSTESEVKFQLSRVSLEPMLKSMAYISEQLSTPANKVAVINLKKWLKMFQLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSYAGDAQSEPVLKKHRK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4353g00001 890 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
Gabi4353g00001 890 MobiDBLite consensus disorder prediction 10 37 - -
Gabi4353g00001 890 SMART 26again6 566 593 IPR006564 GO:0008270
Gabi4353g00001 890 Pfam MULE transposase domain 277 368 IPR018289 -
Gabi4353g00001 890 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 667 IPR031052 GO:0006355
Gabi4353g00001 890 Pfam FAR1 DNA-binding domain 61 136 IPR004330 -
Gabi4353g00001 890 Pfam SWIM zinc finger 555 589 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4353g00001 Gabi-Chr4353 25407 47413 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4353g00001 MULE 9.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4353g00001 - - gmx:100786516 1530.38