Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi434g00004 ATGGATCGCAGGAGCAGCTTGTTGCTGCTGACGGGTTTCTGGGTGTTGTTCTCCGCTTCATCGCAGGTCGAAAACGACGTGAGATGTCTGAGGGGCATCAAGGACAACCTCAAGGACCCTCTGAATCGCCTTGCCTCGTGGCAGTTCAACAACAACACCGTGGGTTTCATCTGCTCCTTCACCGGCGTGACTTGCTGGAACGAGAGGGAGAACAGGGTCTATGGTCTGAATCTCCAACAGCTGAATCTCTCGGGTCAGATCCCCAAGTCGTTGGAGTACTGTGGTAAGAACTTGCAAAATTTGAATCTTGGGTCAAACTTAATCACTTCTGAGATACCGAGTGAGATCTGTGATTGGATGCCGTTTTTGGTGTCACTTGATTTGTCTGGTAATGATCTTTCTGGGCCTATTCCAATTACCCTTAAGAATTGTTCTTATTTGAATGAGTTGGTGCTTTCAGATAATCATCTTTCTGGTCCTATTCCTTTTGAATTTGAGAGTTTGATTAGGCTTAAGAAGTTTTCTGTGGCTAACAATGAACTTAGTGGGACTATTCCTTCATTTTTTAGTAAGTTTGATAAGGAGGACTTTGATGGGAATAGTGGGTTGTGTGGACCTCCTCTTGGATCCAAGTGTGGTGGTTTGAGCAAGAAGAATCTTGCTGTTATTATTGCTGCTGGGGTGTTCGGTGCTGCTGCTTCATTGTTGCTTGCTTTTGGGTTGTGGTGGTGGTATCATTTGAGGTTGAGTGGGAGAAAGGAGAAGGGAGGGTATGGGGTTGGGGGTGTTGATGATTGGGCTGTTAGATTGAGGGGTCATAAGCTTGTTCAGGTTAATCTTTTTCAGAAACCTATTGTGAAGGTTAAGTTGGGGAATTTGATGGCTGCAACAAACAATTTCAATGCTAAGAATGTTCTTTTCTCCACAAGGACGGGGACTACTTATAAGGCTGATCTTCCTGATGGATCAACACTCGCAGTGAAGCGGCTGAACACCTGTAAGATTGGGGAGAAGCAGTTTCGAATGGAGATGAACCTGCTAGGCCAAGTTAGGCACCCGAATTTGGCACCCCTTCTTGGGTTTTGTGTTGTGGAAGAGGAGAAGCTGCTGGTTTATAAGCACATGTCGAATGGGACTCTGTATTCCTTGTTGCATAAGAATGGCAGTGTATTGGATTGGCTGATGAGGTTCAGGATAGGCTTGGGCGCGGCTAGGGGTCTTGCCTGGCTGCACCATGGCTGCCATCCTCCCATTATACAGCAGAACATTTGTTCCAATGTGATTCTTGTTGATGAAGAATTTGATGCTCGGTTGATGGATTTTGGACTCGCGAGACTTATGACATCTGACTCTAGTGGTAGTTTTGTGAATGGGGATTTGGGGGAACTCGGCTATATAGCTCCGGAATATCCAAGTACCCTGGTTGCTTCATTAAAAGGTGATGTTTATGGATTTGGGGTTTTGCTTTTGGAGTTGGCCACCGGACGCAAACCTCTTGAGGTGAGCAATGATCAGGAAGAATTTAAGGGTAGCTTAGTGGATTGGGTAAATATGCATTCAAGTTCTGGTCGAATCAAGGATTGCATTGATCGAGCCATATGTGGAAGGGAACATGATGAGGAGATTCTGCAGTTTCTGAAAATTGCATCTAATTGTGTTGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAGGTTTATCATTCCTTAAAGAGTATATCCAAAGACCACAGTTTCTCTGAACATGATGATGAATTTCCCCTGATCTTTGGTAAGCTAGAAAATGAGCCAGCATAG 1797 0.4502 MDRRSSLLLLTGFWVLFSASSQVENDVRCLRGIKDNLKDPLNRLASWQFNNNTVGFICSFTGVTCWNERENRVYGLNLQQLNLSGQIPKSLEYCGKNLQNLNLGSNLITSEIPSEICDWMPFLVSLDLSGNDLSGPIPITLKNCSYLNELVLSDNHLSGPIPFEFESLIRLKKFSVANNELSGTIPSFFSKFDKEDFDGNSGLCGPPLGSKCGGLSKKNLAVIIAAGVFGAAASLLLAFGLWWWYHLRLSGRKEKGGYGVGGVDDWAVRLRGHKLVQVNLFQKPIVKVKLGNLMAATNNFNAKNVLFSTRTGTTYKADLPDGSTLAVKRLNTCKIGEKQFRMEMNLLGQVRHPNLAPLLGFCVVEEEKLLVYKHMSNGTLYSLLHKNGSVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMTSDSSGSFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGVLLLELATGRKPLEVSNDQEEFKGSLVDWVNMHSSSGRIKDCIDRAICGREHDEEILQFLKIASNCVVSRPKDRWSMYQVYHSLKSISKDHSFSEHDDEFPLIFGKLENEPA 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi434g00004 598 Pfam Leucine rich repeat N-terminal domain 24 66 IPR013210 -
Gabi434g00004 598 Gene3D Transferase(Phosphotransferase) domain 1 375 594 - -
Gabi434g00004 598 Gene3D Ribonuclease Inhibitor 23 214 IPR032675 -
Gabi434g00004 598 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 41 189 - -
Gabi434g00004 598 CDD STKc_IRAK 308 573 - -
Gabi434g00004 598 FunFam Nuclear pore complex protein NUP107 23 187 - -
Gabi434g00004 598 SUPERFAMILY L domain-like 22 200 - -
Gabi434g00004 598 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 374 - -
Gabi434g00004 598 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 375 592 - -
Gabi434g00004 598 Pfam Protein tyrosine and serine/threonine kinase 321 567 IPR001245 GO:0004672|GO:0006468
Gabi434g00004 598 SUPERFAMILY Protein kinase-like (PK-like) 279 570 IPR011009 -
Gabi434g00004 598 Gene3D Phosphorylase Kinase; domain 1 262 374 - -
Gabi434g00004 598 ProSiteProfiles Protein kinase domain profile. 300 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi434g00004 Gabi-Chr434 41984 45163 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi434g00004 24 596 Receptor kinase-like Gene Family AT3G28450 64.767 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Gabi434g00004 PK_Tyr_Ser-Thr 8.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi434g00004 - - gmx:100810378 924.465