Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4349g00001 ATGGCTGAATGGGAGAAGTTGAGAATTTTAGGGAAGGGGTCCTCTGCTATTGTCTACCTTGCTGCCATGGTTGCTCCACAAGAATGCATAGGGAATGTGGTGGCTGTGAAGAGTTCAATGCCTCTCTCAATAGGTTCATTGATGAGAGAAGAAAATATAATGAGATCGTTGATTGGTTGTGAAGAATTCATTCAATGCTACTTTGGCCAATTCACTATTGAGAAGGGTGAATTCATCTATAATCTTGTTATGGAATTTGCACCTTATGGCTCTCTCCGAGACTTAATTAGGAAGGGGCCACTGCTTGAGAGTGAAGCAAGAATCTACACCATTATGCTTCTTAAAGGGCTTTCTTGCATTCATCAAGCCGGAGTTGTTCACTGTGATTTAAAGCCCGACAACATTCTTCTATTTCCTTCATCTAAGAATGATGCAAAGTATCAACTCAAGATTGCAGATTTTGGATTGTCCAAGACTAAAGAAGAGATTATCAATGCTGAGTCTTGGAATTTCAAGTTTAGAGGGACACCATTATACATGTCACCAGAATCAGTTAAGGGTCAGATTGAAACTTCATTGGATATATGGTCTCTTGGATGTATAGTCATAGAGATGATCACTGGGTTATATGTATGGAGGAACCCTCCAACTTCGAAGGAGATGATTCCAACTATAGATGAGATGATGTACAAGCTTGCTGTCCTTGAAGAAGCACCAATGATACCTAATGGAGTAAGTGAGGATTGCAGAGATTTCTTGACCAAATGTTTCATCAAAAATCCTAGTCAGAGATGGACTGCTAGCAAGCTTCTCCACCATCCTTTTCTGTTTTCTCCATATGATTCTTTTAGAGGTTATGAAAGATTTCATATGGTTAATTCTTCGTCCTCATTTTTTTCTTATGATTGTAATTGGTTGTCATTTAAGTCATAA 933 0.3869 MAEWEKLRILGKGSSAIVYLAAMVAPQECIGNVVAVKSSMPLSIGSLMREENIMRSLIGCEEFIQCYFGQFTIEKGEFIYNLVMEFAPYGSLRDLIRKGPLLESEARIYTIMLLKGLSCIHQAGVVHCDLKPDNILLFPSSKNDAKYQLKIADFGLSKTKEEIINAESWNFKFRGTPLYMSPESVKGQIETSLDIWSLGCIVIEMITGLYVWRNPPTSKEMIPTIDEMMYKLAVLEEAPMIPNGVSEDCRDFLTKCFIKNPSQRWTASKLLHHPFLFSPYDSFRGYERFHMVNSSSSFFSYDCNWLSFKS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4349g00001 310 SMART serkin_6 4 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4349g00001 310 Pfam Protein kinase domain 5 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4349g00001 310 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Gabi4349g00001 310 ProSiteProfiles Protein kinase domain profile. 4 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4349g00001 310 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 281 - -
Gabi4349g00001 310 Gene3D Transferase(Phosphotransferase) domain 1 1 299 - -
Gabi4349g00001 310 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Gabi4349g00001 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4349g00001 Gabi-Chr4349 107692 108624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4349g00001 3 276 MAP Kinase Kinase Kinase AT4G36950 38.489 4.48e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi4349g00001 Pkinase 8.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4349g00001 - - gmx:102664043 365.54