Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4346g00005 ATGGAAGACAAAACTAGAAGTTACACCACCAACCTCGTGGATCCAAAAAGCGGTTTCAACACTGCTTCTAGAACCTTCCACAGCCATATGCCCCCACTCAACCTACCTCCGCCTCACGCCAACATCTCCGCCGCGGCATACACCCTCTCCCTCCGCCGCAACTCGTCCTGGTCCGACTCGGTTATCGCACTCGTCGACTCAGCCACGAGTCACCAACTCAGCTACTCAGACTTGATCCAGCGTTCAGAAACCCTGGCCACCAACCTCACCACACTCTATGGACTCACCAAAGGCCAAACCGCATTCATTCTCTCCCCAAACCTCATACAGGTTCCGATCCTCTACTTCGCGCTACTCTCTATTGGCGTGGTCGTCTCTCCCGCAAACCCAATCAGCACGCGCTCCGAGATTTCCCGCCTCGTCAACCTCTGCCAACCTGTCATCGCCTTTGCGACGTCGTTTTCCGCGCCCAAGCTCCCAAAACTCCGTCTCGGAACGATTCTCCTCGACTCGCCCGAGTTCGACTCGCTCACGACGACTACCGCGGCTTCAATCCTACGTGGCGGCGTGGATGTGAGCCAATCCGACGTGGCGGCGATTTTGTACTCGTCCGGGACCACCGGGAAGGTGAAAGGCGTTATGCTCAGGCACCGGAATTTGATGGCGTCAGTGGCGGGATACGACGCCGTTCGCGTGCGGACGGAGAGCCCCGCTGTGTACCTCTATACGGTGCCGTATTTTCACGTGTATGGTTTCACGTACTGCTTGAGGTCGGTGGCTATGATGGATACGGTGGTGGTGATGGAGAGGTTCGGTTTGGGGAAGATGCTGGACGCGGTGGAGAGATTCGGAGTGACTCACCTTGTGGCAGCGCCGCCGGTAGTGGTGGCGATGAGCAAAGACGGAGTGACGGAGGGGCACGATTTGACTTCGTTGCAAGGCGTCCGTTGTGGCGGCGCTCCGCTGGGAAAGGAAACCGTTGCGGCTTTCAAATTAAGATTCCCTGGAGTATTGCTAGTTCAGGGATATGGGTTAACTGAATCAACGGCTGGAGTTATCCGAACAATGGGTCCCGATGAGACTAATCGGCGGCCAGGAACAACAGGTAGACTGATAGGAGGGATGGAAGCAAAAATAGTGAACCCCAATACAGGAGAGGCCATGTTTCCTGGTGAACAGGGGGAACTCTGGCTTAGAGGACCTACAATTATGAAAGGTTATGTAGGTGACCCAGAAGCAACTTCAGTAACTTTGAGGGATGGGTGGTTAAGGACAGGGGATCTCTGCTATTTCGACAATGAAGGTTTCTTGTATGTTGTAGACAGGTTGAAAGAATTGATCAAATACAAGGGTTATCAGGTGGCCCCTGCAGAGCTAGAACAATTGCTCATGTCTCACCCAAAGATAAACGATGCTGCAGTTATTCCATACCCTGATGAAGATGCTGGTCAAGTGCCCATGGCTTTTGTGGTAAGACAGCCTCAAAGTTCCCTGAGCGAAGCAGCAATAATAGATTTTGTAGCCAAACAGGTTGCACCGTACAAGAAAATAAGGCATGTAACTTTTGTCGATTCTATACCAAAAAATGCAGCGGGAAAGATACTGAGGAAAGACTTAAAAAATAAAATTGTCCTCCATCGACCTTCCTCTAGGTTATAA 1659 0.5214 MEDKTRSYTTNLVDPKSGFNTASRTFHSHMPPLNLPPPHANISAAAYTLSLRRNSSWSDSVIALVDSATSHQLSYSDLIQRSETLATNLTTLYGLTKGQTAFILSPNLIQVPILYFALLSIGVVVSPANPISTRSEISRLVNLCQPVIAFATSFSAPKLPKLRLGTILLDSPEFDSLTTTTAASILRGGVDVSQSDVAAILYSSGTTGKVKGVMLRHRNLMASVAGYDAVRVRTESPAVYLYTVPYFHVYGFTYCLRSVAMMDTVVVMERFGLGKMLDAVERFGVTHLVAAPPVVVAMSKDGVTEGHDLTSLQGVRCGGAPLGKETVAAFKLRFPGVLLVQGYGLTESTAGVIRTMGPDETNRRPGTTGRLIGGMEAKIVNPNTGEAMFPGEQGELWLRGPTIMKGYVGDPEATSVTLRDGWLRTGDLCYFDNEGFLYVVDRLKELIKYKGYQVAPAELEQLLMSHPKINDAAVIPYPDEDAGQVPMAFVVRQPQSSLSEAAIIDFVAKQVAPYKKIRHVTFVDSIPKNAAGKILRKDLKNKIVLHRPSSRL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4346g00005 552 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Gabi4346g00005 552 Gene3D - 445 545 IPR045851 -
Gabi4346g00005 552 SUPERFAMILY Acetyl-CoA synthetase-like 58 542 - -
Gabi4346g00005 552 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Gabi4346g00005 552 FunFam 4-coumarate--CoA ligase 2 445 545 - -
Gabi4346g00005 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 542 - -
Gabi4346g00005 552 CDD 4CL 36 539 - -
Gabi4346g00005 552 Pfam AMP-binding enzyme 61 449 IPR000873 -
Gabi4346g00005 552 Gene3D - 27 444 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4346g00005 Gabi-Chr4346 44428 52906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4346g00005 5 552 Monolignol Biosynthesis Gene Families AT5G63380 51.150 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4346g00005 K01904 - gmx:100801143 728.783