Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4346g00004 ATGGAAGACAAAACTAGAAGTTACACCACCAACCTCGTGGATCCAAAAAGCGGTTTCAACACTGCTTCTAGAACCTTCCACAGCCATATGCCCCCACTCAACCTACCTCCGCCTCACGCCAACATCTCCGCCGCGGCATACACCCTCTCCCTCCGCCGCAACTCGTCCTGGTCCGACTCGGTTATCGCACTCGTCGACTCAGCCACGAGTCACCAACTCAGCTACTCAGACTTGATCCAGCGTTCAGAAACCCTGGCCACCAACCTCACCACACTCTATGGACTCACCAAAGGCCAAACCGCATTCATTCTCTCCCCAAACCTCATACAGGTTCCGATCCTCTACTTCGCGCTACTCTCTATTGGCGTGGTCGTCTCTCCCGCAAACCCAATCAGCACGCGCTCCGAGATTTCCCGCCTCGTCAACCTCTGCCAACCTGTCATCGCCTTTGCGACGTCGTTTTCCGCGCCCAAGCTCCCAAAACTCCGTCTCGGAACGATTCTCCTCGACTCGCCCGAGTTCGACTCGCTCACGACGACTACCGCGGCTTCAATCCTACGTGGCGGCGTGGATGTGAGCCAATCCGACGTGGCGGCGATTTTGTACTCGTCCGGGACCACCGGGAAGGTGAAAGGCGTTATGCTCAGGCACCGGAATTTGATGGCGTCAGTGGCGGGATACGACGCCGTTCGCGTGCGGACGGAGAGCCCCGCTGTGTACCTCTATACGGTGCCGTATTTTCACGTGTATGGTTTCACGTACTGCTTGAGGTCGGTGGCTATGATGGATACGGTGGTGGTGATGGAGAGGTTCGGTTTGGGGAAGATGCTGGACGCGGTGGAGAGATTCGGAGTGACTCACCTTGTGGCAGCGCCGCCGGTAGTGGTGGCGATGAGCAAAGACGGAGTGACGGAGGGGCACGATTTGACTTCGTTGCAAGGCGTCCGTTGTGGCGGCGCTCCGCTGGGAAAGGAAACCGTTGCGGCTTTCAAATTAAGATTCCCTGGAGTATTGCTAGTTCAGGGATATGGGTTAACTGAATCAACGGCTGGAGTTATCCGAACAATGGGTCCCGATGAGACTAATCGGCGGCCAGGAACAACAGGTAGACTGATAGGAGGGATGGAAGCAAAAATAGTGAACCCCAATACAGGAGAGGCCATGTTTCCTGGTGAACAGGGGGAACTCTGGCTTAGAGGACCTACAATTATGAAAGGTTATGTAGGTGACCCAGAAGCAACTTCAGTAACTTTGAGGGATGGGTGGTTAAGGACAGGGGATCTCTGCTATTTCGACAATGAAGGTTTCTTGTATGTTGTAGACAGGTTGAAAGAATTGATCAAATACAAGGGTTATCAGGTGGCCCCTGCAGAGCTAGAACAATTGCTCATGTCTCACCCAAAGATAAACGATGCTGCAGTTATTCCATACCCTGATGAAGATGCTGGTCAAGTGCCCATGGCTTTTGTGGTAAGACAGCCTCAAAGTTCCCTGAGCGAAGCAGCAATAATAGATTTTGTAGCCAAACAGGTTCAGGTACCTCGAGGGTTGATACCTCGGACGTCAGGAGGCCGGAGCTTAGTTGACTGA 1590 0.5358 MEDKTRSYTTNLVDPKSGFNTASRTFHSHMPPLNLPPPHANISAAAYTLSLRRNSSWSDSVIALVDSATSHQLSYSDLIQRSETLATNLTTLYGLTKGQTAFILSPNLIQVPILYFALLSIGVVVSPANPISTRSEISRLVNLCQPVIAFATSFSAPKLPKLRLGTILLDSPEFDSLTTTTAASILRGGVDVSQSDVAAILYSSGTTGKVKGVMLRHRNLMASVAGYDAVRVRTESPAVYLYTVPYFHVYGFTYCLRSVAMMDTVVVMERFGLGKMLDAVERFGVTHLVAAPPVVVAMSKDGVTEGHDLTSLQGVRCGGAPLGKETVAAFKLRFPGVLLVQGYGLTESTAGVIRTMGPDETNRRPGTTGRLIGGMEAKIVNPNTGEAMFPGEQGELWLRGPTIMKGYVGDPEATSVTLRDGWLRTGDLCYFDNEGFLYVVDRLKELIKYKGYQVAPAELEQLLMSHPKINDAAVIPYPDEDAGQVPMAFVVRQPQSSLSEAAIIDFVAKQVQVPRGLIPRTSGGRSLVD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4346g00004 529 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Gabi4346g00004 529 Gene3D - 27 444 IPR042099 -
Gabi4346g00004 529 Pfam AMP-binding enzyme 61 449 IPR000873 -
Gabi4346g00004 529 CDD 4CL 36 527 - -
Gabi4346g00004 529 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 512 - -
Gabi4346g00004 529 Pfam AMP-binding enzyme C-terminal domain 458 511 IPR025110 -
Gabi4346g00004 529 Gene3D - 445 522 IPR045851 -
Gabi4346g00004 529 SUPERFAMILY Acetyl-CoA synthetase-like 58 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4346g00004 Gabi-Chr4346 44428 59794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4346g00004 5 511 Monolignol Biosynthesis Gene Families AT5G63380 50.954 7.51e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4346g00004 K01904 - gmx:100801143 677.167