Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4346g00003 ATGGAAGACAAAACTAGAAGTTACACCACCAACCTCGTGGATCCAAAAAGCGGTTTCAACACTGCTTCTAGAACCTTCCACAGCCATATGCCCCCACTCAACCTACCTCCGCCTCACGCCAACATCTCCGCCGCGGCATACACCCTCTCCCTCCGCCGCAACTCGTCCTGGTCCGACTCGGTTATCGCACTCGTCGACTCAGCCACGAGTCACCAACTCAGCTACTCAGACTTGATCCAGCGTTCAGAAACCCTGGCCACCAACCTCACCACACTCTATGGACTCACCAAAGGCCAAACCGCATTCATTCTCTCCCCAAACCTCATACAGGTTCCGATCCTCTACTTCGCGCTACTCTCTATTGGCGTGGTCGTCTCTCCCGCAAACCCAATCAGCACGCGCTCCGAGATTTCCCGCCTCGTCAACCTCTGCCAACCTGTCATCGCCTTTGCGACGTCGTTTTCCGCGCCCAAGCTCCCAAAACTCCGTCTCGGAACGATTCTCCTCGACTCGCCCGAGTTCGACTCGCTCACGACGACTACCGCGGCTTCAATCCTACGTGGCGGCGTGGATGTGAGCCAATCCGACGTGGCGGCGATTTTGTACTCGTCCGGGACCACCGGGAAGGTGAAAGGCGTTATGCTCAGGCACCGGAATTTGATGGCGTCAGTGGCGGGATACGACGCCGTTCGCGTGCGGACGGAGAGCCCCGCTGTGTACCTCTATACGGTGCCGTATTTTCACGTGTATGGTTTCACGTACTGCTTGAGGTCGGTGGCTATGATGGATACGGTGGTGGTGATGGAGAGGTTCGGTTTGGGGAAGATGCTGGACGCGGTGGAGAGATTCGGAGTGACTCACCTTGTGGCAGCGCCGCCGGTAGTGGTGGCGATGAGCAAAGACGGAGTGACGGAGGGGCACGATTTGACTTCGTTGCAAGGCGTCCGTTGTGGCGGCGCTCCGCTGGGAAAGGAAACCGTTGCGGCTTTCAAATTAAGATTCCCTGGAGTATTGCTAGTTCAGGGATATGGGTTAACTGAATCAACGGCTGGAGTTATCCGAACAATGGGTCCCGATGAGACTAATCGGCGGCCAGGAACAACAGGTAGACTGATAGGAGGGATGGAAGCAAAAATAGTGAACCCCAATACAGGAGAGGCCATGTTTCCTGGTGAACAGGGGGAACTCTGGCTTAGAGGACCTACAATTATGAAAGGTTATGTAGGTGACCCAGAAGCAACTTCAGTAACTTTGAGGGATGGGTGGTTAAGGACAGGGGATCTCTGCTATTTCGACAATGAAGGTTTCTTGTATGTTGTAGACAGGTTGAAAGAATTGATCAAATACAAGGGTTATCAGGTGGCCCCTGCAGAGCTAGAACAATTGCTCATGTCTCACCCAAAGATAAACGATGCTGCAGTTATTCCATACCCTGATGAAGATGCTGGTCAAGTGCCCATGGCTTTTGTGGTAAGACAGCCTCAAAGTTCCCTGAGCGAAGCAGCAATAATAGATTTTGTAGCCAAACAGATTGTAATTGTGCGGTGTTTGGACTTTGGACTGTTGTGGACTCATTTGTGGATTGATAGCTTGAAAGGTTCAGGTACCTCGAGGGTTGATACCTCGGACGTCAGGAGGCCGGAGCTTAGTTGA 1653 0.5306 MEDKTRSYTTNLVDPKSGFNTASRTFHSHMPPLNLPPPHANISAAAYTLSLRRNSSWSDSVIALVDSATSHQLSYSDLIQRSETLATNLTTLYGLTKGQTAFILSPNLIQVPILYFALLSIGVVVSPANPISTRSEISRLVNLCQPVIAFATSFSAPKLPKLRLGTILLDSPEFDSLTTTTAASILRGGVDVSQSDVAAILYSSGTTGKVKGVMLRHRNLMASVAGYDAVRVRTESPAVYLYTVPYFHVYGFTYCLRSVAMMDTVVVMERFGLGKMLDAVERFGVTHLVAAPPVVVAMSKDGVTEGHDLTSLQGVRCGGAPLGKETVAAFKLRFPGVLLVQGYGLTESTAGVIRTMGPDETNRRPGTTGRLIGGMEAKIVNPNTGEAMFPGEQGELWLRGPTIMKGYVGDPEATSVTLRDGWLRTGDLCYFDNEGFLYVVDRLKELIKYKGYQVAPAELEQLLMSHPKINDAAVIPYPDEDAGQVPMAFVVRQPQSSLSEAAIIDFVAKQIVIVRCLDFGLLWTHLWIDSLKGSGTSRVDTSDVRRPELS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4346g00003 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Gabi4346g00003 550 SUPERFAMILY Acetyl-CoA synthetase-like 58 511 - -
Gabi4346g00003 550 Pfam AMP-binding enzyme C-terminal domain 458 511 IPR025110 -
Gabi4346g00003 550 CDD 4CL 36 511 - -
Gabi4346g00003 550 Gene3D - 445 546 IPR045851 -
Gabi4346g00003 550 Gene3D - 27 444 IPR042099 -
Gabi4346g00003 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 514 - -
Gabi4346g00003 550 Pfam AMP-binding enzyme 61 449 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4346g00003 Gabi-Chr4346 44428 59794 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4346g00003 5 511 Monolignol Biosynthesis Gene Families AT5G63380 50.763 1.74e-175 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4346g00003 K01904 - gmx:100801143 677.552