Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4346g00001 ATGGAAGACAAAACTGGAAGCTACGCCACCAACCTCGTGGATCCAAAAAGCGGTTTCAACACTGCTTCTAGAACCTTCCACAGCCTTAAGCCCCCACTCAACCTTCCTCCGCCTCACGCCAACATCTCCGCCGCGGCATACACCCTCTCCCTCCGCCGCAACTCGCCCTGGTCCGACTCGGTTATCGCACTCGTCGACTCAGCCACGAGTCACCAACTCAGCTACTCAGACTTGATCCAGCGTTCAGAAACCCTGGCCACCAACCTCACCACACTCTATGGACTCACCAAAGGCCAAACCGCATTCATTCTCTCCCCAAACCTCATACAGGTTCCGATCCTCTACTTCGCGCTACTCTCTATTGGCGTGGTCGTCTCTCCCGCAAACCCAATCAGCACGCGCTCCGAGATTTCCCACCTCCTCAACCTCTGCGAACCTGTCATCGCCTTTGCGACGTCGTTTTCCGCACCCAAGCTCCCAAAACTCCGTCTCGGAACGATTCTCCTCGACTCGCCCGAGTTCGACTCGCTCACAACGACTACCGCGGCTTCAATCCCACGTGGCGGCGTGGAGGTGAGCCAATCCGACGTGGCGGCGGTTTTGTACTCGTCCGGGACCACCGGGAAGGTGAAAGGCGTGATGCTCACGCACCGGAATTTGATGGCGACAGTGGCGGGATACGACGCCGTTCGAGTGCGGACGGAGAGCCCCGCTGTGTACCTCTATACGGTGCCGTATTTTCACGTGTATGGTTTCACGTACTGCTTGAGGTCGGTGGCTATGATGGATACGGTGCTGGTGATGGAGAGGTTCGGTTTAGGGAAGATGCTGGACGCGGTGGAGCGATTCGGATTGACTCACCTTGTGGCAGCGCCGCCGGTAGTGGTGGCGATGAGCAAAAACGGAGTGACGGAGGGGCACGATTTGAGTTCGTTGCAGGGCGTTGCTTGTGGCGGCGCTCCGCTGGGAAAGGAGACCGTTGCGGCTTTCAAATTAAAATTCCCTCGAGTATTGCTAGTCCAGGGATATGGGTTAACTGAATCAACGGCTGGAGTTATCCGAACAATGGGTCCCGATGAGACTAACCGGCCAGGAACAACAGGAAGACTGATAGGAGGGATGGAAGCAAAAATAGTGAACCCCAACACAGGAGAGGCCATGTTTCCTGGTGAACAGGGGGAACTCTGGCTTAGAGGACCTCCAATTATGAAAGGTTATGTAGGTGACCCAGAAGCAACTTCAGCAACTTTGGGGGATGGGTGGTTAAGGACAGGGGATCTCTGCTATTTCGACAATGAAGGTTTCATGTATGTTGTAGACAGGTTGAAAGAATTGATCAAATACAAGGGCTACCAGGTGGCCCCTGCAGAGTTAGAACAATTGCTCCAGTCTCACCCAGAGATAAACGACGCTGCAGTTATTCCATACCCTGATGAAGATGCTGGTCAAGTGCCCATGGCTTTTGTGGTAAGACAGCCTCGAAGTTCCCTGAGCAAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCGTACAAGAAAATAAGGCATGTAACTTTTGTCGATTCTATACCAAAGAATGCAGCGGGAAAGATACTGAGGAAAGAGTTAAAAAATATAATTGTCCCCCATCGACCTTCCTCTAGGTTATAA 1656 0.5284 MEDKTGSYATNLVDPKSGFNTASRTFHSLKPPLNLPPPHANISAAAYTLSLRRNSPWSDSVIALVDSATSHQLSYSDLIQRSETLATNLTTLYGLTKGQTAFILSPNLIQVPILYFALLSIGVVVSPANPISTRSEISHLLNLCEPVIAFATSFSAPKLPKLRLGTILLDSPEFDSLTTTTAASIPRGGVEVSQSDVAAVLYSSGTTGKVKGVMLTHRNLMATVAGYDAVRVRTESPAVYLYTVPYFHVYGFTYCLRSVAMMDTVLVMERFGLGKMLDAVERFGLTHLVAAPPVVVAMSKNGVTEGHDLSSLQGVACGGAPLGKETVAAFKLKFPRVLLVQGYGLTESTAGVIRTMGPDETNRPGTTGRLIGGMEAKIVNPNTGEAMFPGEQGELWLRGPPIMKGYVGDPEATSATLGDGWLRTGDLCYFDNEGFMYVVDRLKELIKYKGYQVAPAELEQLLQSHPEINDAAVIPYPDEDAGQVPMAFVVRQPRSSLSKAEIIDFVAKQVAPYKKIRHVTFVDSIPKNAAGKILRKELKNIIVPHRPSSRL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4346g00001 551 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Gabi4346g00001 551 Gene3D - 36 443 IPR042099 -
Gabi4346g00001 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 540 - -
Gabi4346g00001 551 SUPERFAMILY Acetyl-CoA synthetase-like 61 542 - -
Gabi4346g00001 551 Gene3D - 444 543 IPR045851 -
Gabi4346g00001 551 Pfam AMP-binding enzyme 62 448 IPR000873 -
Gabi4346g00001 551 FunFam 4-coumarate--CoA ligase 2 444 544 - -
Gabi4346g00001 551 CDD 4CL 60 538 - -
Gabi4346g00001 551 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4346g00001 Gabi-Chr4346 16900 22975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4346g00001 5 543 Monolignol Biosynthesis Gene Families AT5G63380 51.439 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4346g00001 K01904 - gmx:100801143 735.332