Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4343g00003 ATGGGTTCTCACCAATTACAAGAACAAACATGGCTCCTGGAGAATGGAAACATCAAGGGGTTGAGCAAGGAGACGAAGCATGGCCGCACTGCACACAACATGTCATCATCTTCATTGCGCAAGAAATCTGACCGCACTCTTGTGTCCAAGGTTCGCTGTGCTTTGCTTAGAAACTTGCTTGTTAACTTCCAAGAGGTTATTCTTGGAACCAAGCTTTCCATTCTCTTCCCTGCCATTCCTGCTGCCATCTTTTCTCAATGCTATGGCTTTGGAAGACCCTTGGTTTTTGTGTTGAGCTTAGTTGGGCTTACCCCACTTGCTGAACGTGTAAGCTTCATCACTGAACAAGTTGCCTATTACACTGGTCCCACAGTTGGAGGGCTTCTAAATGCAACATGTGGGAATGTTACTGAGCTTGTAATAGCAATACTTGCACTCAGTAGTAACAAAATTGCTGTGGTTAAGTATTCTCTCTTGGGTTCCATCCTTTCAAACCTTCTTCTGGTTCTTGGAACTTCTCTATTCTGTGGTGGCATTGCAAACCTTAGAGCGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCACTTATGCTGCTTCTGGGATTGTTGTGCCACTTGCTTCCAATGCTGTTCAGATATGGTGCTGCCTCACCTGCTCTCACTGCAGACCCATCTCTCTACTTGTCAAGAGCTTCTAGTATTGTGATGTTGATTGCATATTTTGCTTACCTTGTTTTTCAACTATGGACACACCGGGAATTATTTGAAGCTGAAGAGGAAGTTGGAGATGGCAACAATGCTTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGCTAGTTGGGATGACTGTGTTCATTGCTTTGTTGTCTGAATACGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTTAGCTTTCTCAGCATAATCTTGCTTCCAATTGTTGGCAATGCAGCTGAACATGCAGGAGCAGTCATATTTGCTTTCAAGAACAAACTGGACATTTCATTGGGTGTTGCATTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCTCTATGCGTGACTGTTGCTTGGATAATGGGTGTCAAAATGGACCTCAACTTCAACCTCTTAGAGACAGGTTCTCTTGCTTTGGCAATAATAGCCACATCCTTCACTTTACAGGATGGTTCTTCTCACTACATGAAAGGACTTATTCTCCTGCTATGCTACATTGTTATTGGGGCTTGCTTCTTTGTACAGAGAACACCCTTTGACCAAGCAAATGTGACTAACATCACAGTTAAATCAGCCACTGATGCAGTTTTAAGTGCCTAG 1353 0.4339 MGSHQLQEQTWLLENGNIKGLSKETKHGRTAHNMSSSSLRKKSDRTLVSKVRCALLRNLLVNFQEVILGTKLSILFPAIPAAIFSQCYGFGRPLVFVLSLVGLTPLAERVSFITEQVAYYTGPTVGGLLNATCGNVTELVIAILALSSNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLRAEQKYDRRQADVNSLMLLLGLLCHLLPMLFRYGAASPALTADPSLYLSRASSIVMLIAYFAYLVFQLWTHRELFEAEEEVGDGNNASEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQISMFVVPLCVTVAWIMGVKMDLNFNLLETGSLALAIIATSFTLQDGSSHYMKGLILLLCYIVIGACFFVQRTPFDQANVTNITVKSATDAVLSA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4343g00003 450 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 429 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi4343g00003 450 FunFam Vacuolar cation/proton exchanger 269 425 - -
Gabi4343g00003 450 Gene3D - 123 264 IPR044880 -
Gabi4343g00003 450 Gene3D - 270 425 IPR044880 -
Gabi4343g00003 450 FunFam Vacuolar cation/proton exchanger 123 267 - -
Gabi4343g00003 450 NCBIfam calcium/proton exchanger 58 424 - -
Gabi4343g00003 450 NCBIfam calcium/proton exchanger 78 424 IPR004798 GO:0006816|GO:0015369
Gabi4343g00003 450 Pfam Sodium/calcium exchanger protein 94 251 IPR004837 GO:0016020|GO:0055085
Gabi4343g00003 450 Pfam Sodium/calcium exchanger protein 281 419 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4343g00003 Gabi-Chr4343 8630 12265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4343g00003 14 429 Antiporters AT2G38170 71.698 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4343g00003 K07300 - gmx:100779440 715.687