Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4343g00001 ATGGGTTCTCACCAATTACAAGAACAAACATGGCTCCTGGAGAATGGAAACATCAAGGGGTTGAGCAAGGAGACGAAGCATGGCCGCACTGCACACAACATGTCATCATCTTCATTGCGCAAGAAATCTGACCGCACTCTTGTGTCCAAGCCCTTGGTTTTTGTGTTGAGCTTAGTTGGGCTTACCCCACTTGCTGAACGTGTAAGCTTCATCACTGAACAAGTTGCCTATTACACTGGTCCCACAGTTGGAGGGCTTCTAAATGCAACATGTGGGAATGTTACTGAGCTTGTAATAGCAATACTTGCACTCAGTAGTAACAAAATTGCTGTGGTTAAGTATTCTCTCTTGGGTTCCATCCTTTCAAACCTTCTTCTGGTTCTTGGAACTTCTCTATTCTGTGGTGGCATTGCAAACCTTAGAGCGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCACTTATGCTGCTTCTGGGATTGTTGTGCCACTTGCTTCCAATGCTGTTCAGATATGGTGCTGCCTCACCTGCTCTCACTGCAGACCCATCTCTCTACTTGTCAAGAGCTTCTAGTATTGTGATGTTGATTGCATATTTTGCTTACCTTGTTTTTCAACTATGGACACACCGGGAATTATTTGAAGCTGAAGAGGAAGTTGGAGATGGCAACAATGCTTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGCTAGTTGGGATGACTGTGTTCATTGCTTTGTTGTCTGAATACGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTTAGCTTTCTCAGCATAATCTTGCTTCCAATTGTTGGCAATGCAGCTGAACATGCAGGAGCAGTCATATTTGCTTTCAAGAACAAACTGGACATTTCATTGGGTGTTGCATTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCTCTATGCGTGACTGTTGCTTGGATAATGGGTGTCAAAATGGACCTCAACTTCAACCTCTTAGAGACAGGTTCTCTTGCTTTGGCAATAATAGCCACATCCTTCACTTTACAGGATGGTTCTTCTCACTACATGAAAGGACTTATTCTCCTGCTATGCTACATTGTTATTGGGGCTTGCTTCTTTGTACAGAGAACACCCTTTGACCAAGCAAATGTGACTAACATCACAGTTAAATCAGCCACTGATGCAGTTTTAAGTGCCTAG 1227 0.4336 MGSHQLQEQTWLLENGNIKGLSKETKHGRTAHNMSSSSLRKKSDRTLVSKPLVFVLSLVGLTPLAERVSFITEQVAYYTGPTVGGLLNATCGNVTELVIAILALSSNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLRAEQKYDRRQADVNSLMLLLGLLCHLLPMLFRYGAASPALTADPSLYLSRASSIVMLIAYFAYLVFQLWTHRELFEAEEEVGDGNNASEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQISMFVVPLCVTVAWIMGVKMDLNFNLLETGSLALAIIATSFTLQDGSSHYMKGLILLLCYIVIGACFFVQRTPFDQANVTNITVKSATDAVLSA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4343g00001 408 Pfam Sodium/calcium exchanger protein 52 209 IPR004837 GO:0016020|GO:0055085
Gabi4343g00001 408 Pfam Sodium/calcium exchanger protein 239 377 IPR004837 GO:0016020|GO:0055085
Gabi4343g00001 408 FunFam Vacuolar cation/proton exchanger 227 383 - -
Gabi4343g00001 408 MobiDBLite consensus disorder prediction 23 42 - -
Gabi4343g00001 408 NCBIfam calcium/proton exchanger 47 382 - -
Gabi4343g00001 408 NCBIfam calcium/proton exchanger 49 382 IPR004798 GO:0006816|GO:0015369
Gabi4343g00001 408 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 50 387 IPR004713 GO:0006812|GO:0008324|GO:0016020
Gabi4343g00001 408 Gene3D - 228 383 IPR044880 -
Gabi4343g00001 408 Gene3D - 81 222 IPR044880 -
Gabi4343g00001 408 FunFam Vacuolar cation/proton exchanger 81 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4343g00001 Gabi-Chr4343 8630 12265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4343g00001 14 387 Antiporters AT2G38170 66.274 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4343g00001 K07300 - gmx:100816231 631.713