Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4341g00006 ATGAAGAGGTCCAGAGATGATGTTTACATGAGTTCACAACTCAAACGGCCCGTGGTGTCTTCTAGAGGAGAACCTTCGGGACAACCCCAGATGATTAGTGGTGGCGGTCAGAAACTGACCACAAATGATGCCTTAGCATATCTCAAGGCAGTGAAGGATATGTTTCAAAATAAGAGGGAAAAATATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGAAAGAGTGAAAGATCTGTTTCAAGGGCATAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAAGGATTTGAAATCACGCTTCCCTTGGAGGATGAACAACCTGCTCAGAAGAAGCCTGTTGAATTTGCAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTATAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAATCAAGTCTATCACCGAGGTTTACCAGGAGGTTGCTGAACTTTTCCAGGACCACGCAGATCTTCTTGAGGAGTTTACTCACTTTCTTCCTGATACTTCTGGAACAGCCTCTACTCATTATGCTTCCGCTCGAAATTCTCTCCTTCGTGATAGGAGCTCTGCAATGCCAACAGGGAGGCAAATGCATGCTGACAAGAGAGAAAGGACCATAGCTTCACATGGTGATCGTGACCTTAGTGTTGACCATTCAGATCCAGAACTTGACAGAGGTTTGATCAGGGCTGATAAGGAGCAGCAGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAGAGAGATAGGAGAGAACAGGGTAGGGATGATAGGGATTATGATCATGATGGTAGTCGGGAACGTTTGTCCCACAAGCGGAAATCTGGTCATAGGGTTGAAGACTCTGGTGCTGAACCATTGCATGATGCAGATGAAAATTTTGGCATGCGCTCATCTGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCAAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGTAACCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACGCGACATGAATTGCAGTCATTGGTGGGTGATTTACTCGGAAAATATCCAGATCTTATGGAGGGATTTAATGAATTTTTGGCACAGTGTGAGAAGAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTGTGGAATGAAGGACATGGACTGAAACCAATGAAGGCAGAAGACAGGGATCGAGATCGTGATAGGGATGATGGGGTGAAAGAAAGGGATCGTGAATGCCGAGAAAGAGACAAATCGACTGCAACTGCGAACAAGGATGTTTCAGTTCCTAAGATGCCTGTATATGTCAGCAAGGATAAGTATGTAGCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAGCAATGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCCAATACAGTCAGCTAGCCAGAGAACAGAACTTGGCGCAGAAGTATTGAATGATCACTGGGTTTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTACGAAGAGAGCTTGTTTAGATGTGAAGATGACAGCTCTAAATCTTAG 1677 0.4246 MKRSRDDVYMSSQLKRPVVSSRGEPSGQPQMISGGGQKLTTNDALAYLKAVKDMFQNKREKYDDFLEVMKDFKAQRIDTTGVIERVKDLFQGHKDLILGFNTFLPKGFEITLPLEDEQPAQKKPVEFAEAINFVGKIKTRFQGNDRVYKSFLDILNMYRKEIKSITEVYQEVAELFQDHADLLEEFTHFLPDTSGTASTHYASARNSLLRDRSSAMPTGRQMHADKRERTIASHGDRDLSVDHSDPELDRGLIRADKEQQRRGEKEKDRREERDRREQGRDDRDYDHDGSRERLSHKRKSGHRVEDSGAEPLHDADENFGMRSSACEDKSSLKSMCSQVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLAQCEKNEGFLAGVMNKKSLWNEGHGLKPMKAEDRDRDRDRDDGVKERDRECRERDKSTATANKDVSVPKMPVYVSKDKYVAKPINELDLSNCEQCTPSYRLLPKNYPIQSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDSSKS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4341g00006 558 MobiDBLite consensus disorder prediction 424 458 - -
Gabi4341g00006 558 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Gabi4341g00006 558 MobiDBLite consensus disorder prediction 14 36 - -
Gabi4341g00006 558 MobiDBLite consensus disorder prediction 422 462 - -
Gabi4341g00006 558 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Gabi4341g00006 558 SMART hdac_interact2seq4b 489 558 IPR013194 -
Gabi4341g00006 558 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Gabi4341g00006 558 Coils Coil 255 275 - -
Gabi4341g00006 558 FunFam Paired amphipathic helix protein SIN3 329 403 - -
Gabi4341g00006 558 Pfam Sin3 family co-repressor 491 554 IPR013194 -
Gabi4341g00006 558 ProSiteProfiles PAH domain profile. 332 401 IPR003822 GO:0006355
Gabi4341g00006 558 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Gabi4341g00006 558 MobiDBLite consensus disorder prediction 1 36 - -
Gabi4341g00006 558 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Gabi4341g00006 558 Pfam Paired amphipathic helix repeat 354 398 IPR003822 GO:0006355
Gabi4341g00006 558 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Gabi4341g00006 558 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Gabi4341g00006 558 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Gabi4341g00006 558 SUPERFAMILY PAH2 domain 336 401 IPR036600 GO:0006355
Gabi4341g00006 558 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Gabi4341g00006 558 MobiDBLite consensus disorder prediction 221 317 - -
Gabi4341g00006 558 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Gabi4341g00006 558 MobiDBLite consensus disorder prediction 207 317 - -
Gabi4341g00006 558 Gene3D Paired amphipathic helix 330 403 IPR036600 GO:0006355
Gabi4341g00006 558 PANTHER SIN3B-RELATED 38 556 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4341g00006 Gabi-Chr4341 70457 76218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4341g00006 28 119 WRKY Transcription Factor Family AT4G12020 58.511 9.60e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4341g00006 Sin3_corepress 5.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4341g00006 K11644 - gmx:100781798 845.114