Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4341g00004 ATGAAGAGGTCCAGAGATGATGTTTACATGAGTTCACAACTCAAACGGCCCGTGGTGTCTTCTAGAGGAGAACCTTCGGGACAACCCCAGATGATTAGTGGTGGCGGTCAGAAACTGACCACAAATGATGCCTTAGCATATCTCAAGGCAGTGAAGGATATGTTTCAAAATAAGAGGGAAAAATATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGAAAGAGTGAAAGATCTGTTTCAAGGGCATAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAAGGATTTGAAATCACGCTTCCCTTGGAGGATGAACAACCTGCTCAGAAGAAGCCTGTTGAATTTGCAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTATAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAATCAAGTCTATCACCGAGGTTTACCAGGAGGTTGCTGAACTTTTCCAGGACCACGCAGATCTTCTTGAGGAGTTTACTCACTTTCTTCCTGATACTTCTGGAACAGCCTCTACTCATTATGCTTCCGCTCGAAATTCTCTCCTTCGTGATAGGAGCTCTGCAATGCCAACAGGGAGGCAAATGCATGCTGACAAGAGAGAAAGGACCATAGCTTCACATGGTGATCGTGACCTTAGTGTTGACCATTCAGATCCAGAACTTGACAGAGGTTTGATCAGGGCTGATAAGGAGCAGCAGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAGAGAGATAGGAGAGAACAGGGTAGGGATGATAGGGATTATGATCATGATGGTAGTCGGGAACGTTTGTCCCACAAGCGGAAATCTGGTCATAGGGTTGAAGACTCTGGTGCTGAACCATTGCATGATGCAGATGAAAATTTTGGCATGCGCTCATCTGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCAAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGTAACCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACGCGACATGAATTGCAGTCATTGGTGGGTGATTTACTCGGAAAATATCCAGATCTTATGGAGGGATTTAATGAATTTTTGGCACAGTGTGAGAAGAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTGTGGAATGAAGGACATGGACTGAAACCAATGAAGGCAGAAGACAGGGATCGAGATCGTGATAGGGATGATGGGGTGAAAGAAAGGGATCGTGAATGCCGAGAAAGAGACAAATCGACTGCAACTGCGAACAAGGATGTTTCAGTTCCTAAGATGCCTGTATATGTCAGCAAGGATAAGTATGTAGCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAGCAATGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCCAATACAGTCAGCTAGCCAGAGAACAGAACTTGGCGCAGAAGTATTGAATGATCACTGGGTTTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTACGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACTAAACGAGTTGAAGAGCTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACTGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCGTTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTAAGGAAGAATGCATCTCTATCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAAGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGTCTGAAATATATGCAAAGAACTATCACAAATCACTGGATCATCGTAGTTTCTACTTCAAGCAGCAGGATTCAAAAAGCTTAAGCCCTAAAGCCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACAAAAAGATGATGATTTTCTTCTGGCAATTGCTGCTGGAAATAGATGGCCTATTCTTCCTCACTTGGAATTTGAATATCCTGATCCAGAGATCCATGAGGATTTGTATCAGCTCATAAAGTATTCCTGTGGAGAAGTTTGTACAACCGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGTGTTCCTTCTCGACCCCAGGGTCCGGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGCCAAAAGTGGCTCTACAAGTGCTGAGGGTGACGGTAGTCCCGGTGTGGGTACTACCATAATCAATACTAAAAATTTTAACACTAATAGAAATAGGGATGTAGAACAATCAAATTCTTGCAAGGAATGGCAAACAAATGGGGATAGTGGGGTTAAAGAGGATAATTGTCTCGATTCTGACCGTTCTGTTCATAAGACTGAAACTTTAGGCAGTAGTACTCAGCAGGGTAAAATGCATATAAGGGCATCCATGCCTGATGAAGTATCAAGAGTCAATCAACAAGATCATTCCATTGAACGGTTAGTGAATGCTAATGTCTCACTGTCCTCTGCAATGGAGCAAATTAATGCAAGAACGAATGTGGGCAATGCTTCAGGACTTACTGCAACTCCGTCTAGACCTGGTAATGTTTCTAGTGAGGGAGGACTTGATTTACCTTTATCAGAGGGTGCTGATTCTACTAGACCAGTTACATCCACAAATGGGGCCATCACTGAAGACACCAAAGTTCACAGCTACCATGAAGAATCAGTTGGACACTTCAAAATTGAAAGAGAAGAGGGGGAGTTATCTCCTAATGGAGATTTTGAAGAGGATAATTTTGGAGTTTATGGGGATGCTGGCTTGGAGGCAGTGCATAAAGGAAAAGATTGTAGTGCAGGTCGACAATACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAGCTGGAGGAGGAAATGATGCTGATGATGAAGGTGAAGAAAGTCCTAATAGATCATCAGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGCTTCTGGTACTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAACATGAGGAGGATGGGGATCATGAACATGTTAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCAATGATGTTGAAGGAGATGGAGCCTCAGTACCATATTCAGAGCGCTTTCTTCTCACTGTAAAGCCACTGGCAAAACATGTTCCCCCAGTGTTGCATGAGAAAGAAAGGAATGTTCGAGTTTTTTACGGAAATGATTCCTTTTATGTTCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAGTGGAAGGCTTCGAATGATTCAAGCTCTACTGATCAATATGGCAGGTTCATGAATTCCCTTTACAATTTATTGGATGGTTCTTCTGATAATACAAAATTTGAAGATGACTGTAGAGCTATTATTGGAACTAAGTCATATGTCTTGTTCACATTAGACAAGCTGATATATAAAATTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAACAAGCTTCTTCAACTATATGCATATGAAAATTCAAGAAAATCTGGAAGATTTGTTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACATGTATCGTATTGAATGTTCGCCTGCACCTACTCGATTGTCTATTCAACTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACCATGACTTTCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGCAAATATGCCTGTAGTGATGAATTTTCAAGCCAGGCCATGGATGGACTACAAGTTATCAACGGTCTGGAATGTAAGATAGTTTGCAATTCATCCAAGGTTTCATACGTTTTAGATACCGAAGATTTTTTATTTCGAAGGAGAAGGGAAAGGAGAACCTTGCATCAGAACATTTCATGCCAGGAACAGGCAAAGTCTTCAACCATTTGTTCAAGCAGAGTAAAGCGGGTCTGCAAATTGTTTTCCAGTACATAA 4254 0.4083 MKRSRDDVYMSSQLKRPVVSSRGEPSGQPQMISGGGQKLTTNDALAYLKAVKDMFQNKREKYDDFLEVMKDFKAQRIDTTGVIERVKDLFQGHKDLILGFNTFLPKGFEITLPLEDEQPAQKKPVEFAEAINFVGKIKTRFQGNDRVYKSFLDILNMYRKEIKSITEVYQEVAELFQDHADLLEEFTHFLPDTSGTASTHYASARNSLLRDRSSAMPTGRQMHADKRERTIASHGDRDLSVDHSDPELDRGLIRADKEQQRRGEKEKDRREERDRREQGRDDRDYDHDGSRERLSHKRKSGHRVEDSGAEPLHDADENFGMRSSACEDKSSLKSMCSQVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLAQCEKNEGFLAGVMNKKSLWNEGHGLKPMKAEDRDRDRDRDDGVKERDRECRERDKSTATANKDVSVPKMPVYVSKDKYVAKPINELDLSNCEQCTPSYRLLPKNYPIQSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINANIIKGDCPIRIEEHLTALNLRCVERLYGDHGLDVMDVLRKNASLSLPVILTRLKQKQDEWARCRADFNKVWSEIYAKNYHKSLDHRSFYFKQQDSKSLSPKALLAEIKEISEKKQKDDDFLLAIAAGNRWPILPHLEFEYPDPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPVFGVPSRPQGPEDTEDVVKAKNNSAKSGSTSAEGDGSPGVGTTIINTKNFNTNRNRDVEQSNSCKEWQTNGDSGVKEDNCLDSDRSVHKTETLGSSTQQGKMHIRASMPDEVSRVNQQDHSIERLVNANVSLSSAMEQINARTNVGNASGLTATPSRPGNVSSEGGLDLPLSEGADSTRPVTSTNGAITEDTKVHSYHEESVGHFKIEREEGELSPNGDFEEDNFGVYGDAGLEAVHKGKDCSAGRQYQNRHGEEVCGEAGGGNDADDEGEESPNRSSEDSENASENGDASGTESADGEECSREEHEEDGDHEHVNKAESEGEAEGIADANDVEGDGASVPYSERFLLTVKPLAKHVPPVLHEKERNVRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNDSSSTDQYGRFMNSLYNLLDGSSDNTKFEDDCRAIIGTKSYVLFTLDKLIYKIVKQLQAVATDEMDNKLLQLYAYENSRKSGRFVDIVYHENARVLLHDENMYRIECSPAPTRLSIQLMDYGHDKPEVTAVSMDPNFSAYLHHDFLSVVPDKKEKSGIFLKRNKRKYACSDEFSSQAMDGLQVINGLECKIVCNSSKVSYVLDTEDFLFRRRRERRTLHQNISCQEQAKSSTICSSRVKRVCKLFSST 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 424 458 - -
Gabi4341g00004 1417 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Gabi4341g00004 1417 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Gabi4341g00004 1417 Pfam Paired amphipathic helix repeat 354 398 IPR003822 GO:0006355
Gabi4341g00004 1417 Pfam C-terminal domain of Sin3a protein 1131 1377 IPR031693 -
Gabi4341g00004 1417 Coils Coil 255 275 - -
Gabi4341g00004 1417 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 1021 1035 - -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 906 945 - -
Gabi4341g00004 1417 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Gabi4341g00004 1417 ProSiteProfiles PAH domain profile. 332 401 IPR003822 GO:0006355
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 1056 1084 - -
Gabi4341g00004 1417 Gene3D Paired amphipathic helix 330 403 IPR036600 GO:0006355
Gabi4341g00004 1417 PANTHER SIN3B-RELATED 38 1275 IPR039774 GO:0003714
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 763 838 - -
Gabi4341g00004 1417 FunFam Paired amphipathic helix protein SIN3 329 403 - -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 207 317 - -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 1007 1085 - -
Gabi4341g00004 1417 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 422 462 - -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 14 36 - -
Gabi4341g00004 1417 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Gabi4341g00004 1417 SUPERFAMILY PAH2 domain 336 401 IPR036600 GO:0006355
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 781 836 - -
Gabi4341g00004 1417 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 1 36 - -
Gabi4341g00004 1417 Pfam Sin3 family co-repressor 491 582 IPR013194 -
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 906 921 - -
Gabi4341g00004 1417 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Gabi4341g00004 1417 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Gabi4341g00004 1417 MobiDBLite consensus disorder prediction 221 317 - -
Gabi4341g00004 1417 SMART hdac_interact2seq4b 489 589 IPR013194 -
Gabi4341g00004 1417 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4341g00004 Gabi-Chr4341 64221 76218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4341g00004 28 119 WRKY Transcription Factor Family AT4G12020 58.511 9.20e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4341g00004 Sin3a_C 6.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4341g00004 K11644 - gmx:100781798 2245.31