Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4341g00001 ATGGAAGGTCAACAAGAATTAACCGCTTCCACACTTTTGAAACTGTCAGCAAACAAAACCAATTTGCATAAGACAAAGAAGGACAAAACTTGCAGAAACCTCATTTCCTCTACTTTCATGGCTTTGAACATGATGCTTCAATCATGGCTTCTTTTGAGCCTTGTTTTTGTTTTACACATTTTTTCAATACCAACCTGTCATTGCCAGACTAGTTCTCCTCAGAACATTGAAACTTTTTATCCAATTGAAACTTCATCCCCACCCCCATCACCACCAACACAAAATCATGCCCCAGGACCAGTGGCAGCATCAAGTAGTTCTTCATCAAAGGGTAAGATAGCAAAGGCTGTAGCTGCAACTGCAGCAAGCACTATAGTTGTTTGTGGTTTAATTTTCATTTTAGTTCAAAGGTGCTTAAGAGCAAGAAGGAAAAAGGAGATAACTAACACTGCTTCTGCTGGAGATAGGCGTGTTGTGCCTCAGGGAAATCCGTTTGAGCGTATTGATGGAAATGTTAGGGGAATGATTGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAACTTGAAGGGAAAAACTCCAACAAGGATCTTTATAAGGAGGTCTTGCATAGTCCCAAAAACAAAGAAGAAGAAGAAGAAGAAGATAGCCATGAAGGAAATCAAGTGAAAAAATCCAAGTCTATACAAGAAACTCCTCTTCTTAGAGGGAAATCTTCAACTTCCCACATAACTCCGGAAGAGGATGAGCCATATAGAATTACAAGAACTGCCCCTCCTCCTTCTGCATCAGTTGGGGTTGCTATCAAGGGTGTTCATAAACCAGATTCTCCAACTCAACCATCCACTCCACCCCCTCCATCATCACCATCAACACCATCCTCCATTTCTTTTTCAGCAATTCCAAAAGTGAATAACCCTACACCATCACCTCTTCCTCCCCCATTGCCAGATAGAAAGATTCCAGCAGCACCACCTGCCCCTCCTCCACTCTCAGCTAGAAAGAGTCCAGTGCCACCACCTCCTCCTCCACTGAAGGCAGGTAATTTGAAGTCATCATCAAAATCATCACCTGCCCCCATTGAAATGCCAGCTATCTCCCACAGCAAGCAAAGAAACTCTTCAGGGAAAGGCATGACCGAAACCAACAATGATCAAGTGAAGCTCAAGCCTTTGCATTGGGATAAGGTGAATACTAATGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGACCAAGATCTTATGGAAGCTCTCTTCGGCTCTGTCGCGACCAACCGAAGATCCCCCAAAGGAAAGAGTCAATCAACAAGTCCAAGCCGCGATGCCTCAGCTCCATCAACAAAAAGTTTCCTTCTTGACCCTAGAAAATCACAGAACATTTCTATAGTTTTGAAATCTCTTGCAGTCTCACAAGGTGAAATTCTTGATGCACTCATTGATGGTAAAGGCCTCAATGCAGATACCCTTGAGAAGCTATCTAGAGTTTCACCAACAGAAGAAGAGCAATCTCTTATCCTTGAATACAAAGGAGACCCGGCAAGCCTTGCTGCAGCTGAATCTTTCTTATATCACATCCTCAAAGCTGTTCCTTCAGCCTTTAAGCGCTTAAATGCCATGCTATTCAGGTTTAACTATGACTCCGAGATTCTAGAAATCAAGGAATCTCTGCAGACCCTTGAACTGGGGTGTAAGGAGCTTAAAAGCCAGGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAATCGAATGAATGCAGGAACTACTAGAGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTAAGAAAGCTCTCTGATGTGAAGAGCACCAATGGAAAAACAACTTTACTTCACTTTGTGGTTGAAGAAGTAGTCCGCTCTGAAGGAAAACGTGTTGTTCTTAACCGCAATAGTAGCCTGAGCCGTAGTAGCAGCAGAAGCAGCAACAGCAGTGGAAACCATGAGAACAGTGCCACCTCAAATGAACAAAGAGAAAGGGAATATACAACTCTAGGATTACCCCTTGTTGGAGGGATCAGTTCTGAGTTCTCCAATGTTAAGAAAGCAGCACATATAGATTATAACAGTTTAGTTGGTTCAATCTCAGTCCTCTTAACCCGGCTAGGTGAAATTCATGAGCTTGTTTCGCGGTGTGGAAATGGTGGAGAAGGATCTTTTGTAAAAGAAATGGACCAGTTTCTCAGAAATGCTGAGGAAGAATTGAAATTAGTGAGGGAAAAACAAACAATGGTATTGCAGCTTATCAATAGAACAACACAATATTATCAAGGAGGAGCTTCAAAAGGCACTGCAGAACAAAATCTTCAACTATTTGTCATAGTCAAGGATTTTCTGGGAATGGTTGATCAAACTTGCATTGAGATTGCGCGTAACATGCAGAAGAGGAAGACTCCCAATGCAACTTCTGGCTAA 2463 0.4255 MEGQQELTASTLLKLSANKTNLHKTKKDKTCRNLISSTFMALNMMLQSWLLLSLVFVLHIFSIPTCHCQTSSPQNIETFYPIETSSPPPSPPTQNHAPGPVAASSSSSSKGKIAKAVAATAASTIVVCGLIFILVQRCLRARRKKEITNTASAGDRRVVPQGNPFERIDGNVRGMIVDEDGLDVIYWRKLEGKNSNKDLYKEVLHSPKNKEEEEEEDSHEGNQVKKSKSIQETPLLRGKSSTSHITPEEDEPYRITRTAPPPSASVGVAIKGVHKPDSPTQPSTPPPPSSPSTPSSISFSAIPKVNNPTPSPLPPPLPDRKIPAAPPAPPPLSARKSPVPPPPPPLKAGNLKSSSKSSPAPIEMPAISHSKQRNSSGKGMTETNNDQVKLKPLHWDKVNTNADHSMVWDKVDRGSFRVDQDLMEALFGSVATNRRSPKGKSQSTSPSRDASAPSTKSFLLDPRKSQNISIVLKSLAVSQGEILDALIDGKGLNADTLEKLSRVSPTEEEQSLILEYKGDPASLAAAESFLYHILKAVPSAFKRLNAMLFRFNYDSEILEIKESLQTLELGCKELKSQGLFVKLLEAVLKAGNRMNAGTTRGNAQAFNLASLRKLSDVKSTNGKTTLLHFVVEEVVRSEGKRVVLNRNSSLSRSSSRSSNSSGNHENSATSNEQREREYTTLGLPLVGGISSEFSNVKKAAHIDYNSLVGSISVLLTRLGEIHELVSRCGNGGEGSFVKEMDQFLRNAEEELKLVREKQTMVLQLINRTTQYYQGGASKGTAEQNLQLFVIVKDFLGMVDQTCIEIARNMQKRKTPNATSG 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 206 392 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 307 348 - -
Gabi4341g00001 820 SMART it6_source 380 813 IPR015425 -
Gabi4341g00001 820 Coils Coil 737 757 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 646 676 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 227 242 - -
Gabi4341g00001 820 Gene3D Formin, FH2 domain 398 818 IPR042201 -
Gabi4341g00001 820 Pfam Formin Homology 2 Domain 383 798 IPR015425 -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 429 458 - -
Gabi4341g00001 820 Coils Coil 557 577 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 434 458 - -
Gabi4341g00001 820 PANTHER FORMIN-RELATED 60 810 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gabi4341g00001 820 ProSiteProfiles Formin homology-2 (FH2) domain profile. 380 820 IPR015425 -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 206 226 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 368 388 - -
Gabi4341g00001 820 SUPERFAMILY Formin homology 2 domain (FH2 domain) 326 813 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 79 107 - -
Gabi4341g00001 820 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4341g00001 Gabi-Chr4341 24183 26797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4341g00001 387 806 FH2 protein (formin) Gene Family AT1G59910 55.107 1.91e-149 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4341g00001 - - gmx:100783219 953.74