Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4331g00004 ATGGGTAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGACCTTGGTCTCCAGAAGAAGATGCTAAGCTCAAATCCTACATCGAACAGCACGGAACCGGTGGTAACTGGATCGCTTTGCCACAAAAGATCGGTCTTAAGCGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAATTATCTTCGCCCTAATATCAAGCACGGAGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGGTGGTCGGTCATTGCAGCTCAATTGCCAGGACGAACTGATAATGATATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCATCGTAAAGAATTGCAACAGTCACGTAATAAAGGAAACGGTGTTGTTGTTAAGCAAGAAAGCAATAGAGGGAGAGGGAGTGGGGAAAATAGTACTCAACAACAGCCATATTGGCCACAGATTCCTGTGCTGCCACCGTTGTTGCCATACACAAATCAAGGTCCCAGTAGTTTCAACGACCAAGATTCTATTAGAAAATTGCTAATTAAACTTGGAGGGAGATTCCCTGATGATTACCATCCTACCCTTGATGGGTTGAATCTTCAATTCCCAGATGGCACTCCCACAACACAACAATTTCATGAAGAACAAGTCCACAATATTGGCTCTTCAGCTGGTTGCATGAACTCTATTAACAACAATCAAGTACAATTTTCTCAGACTAATAATCTGTATTGTGCTGAGGTGGCCGCAGGATTTGACTACGTGCAAGGACAAGGAAGTTTCTCTGCAACAATTGGGGAAATGGTATCTACTAATTATCCACAAACTTTTGGTGGATTGGAGTTCTTCCATGGGGAGGACATGATCACTGATAAGATAATAGATACTCCTACTTGTATCCAAAGTACCAATTGGGGTGAGACAAGCACTGTGATTTATCCACCTCTTGTTGCTTCAAATTACCAGTGTTTGCGGCAAGAGACCTCAGAAGAATGTGTTTTTCAAGAGTTGAGCTACCCATAG 1047 0.4308 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQQSRNKGNGVVVKQESNRGRGSGENSTQQQPYWPQIPVLPPLLPYTNQGPSSFNDQDSIRKLLIKLGGRFPDDYHPTLDGLNLQFPDGTPTTQQFHEEQVHNIGSSAGCMNSINNNQVQFSQTNNLYCAEVAAGFDYVQGQGSFSATIGEMVSTNYPQTFGGLEFFHGEDMITDKIIDTPTCIQSTNWGETSTVIYPPLVASNYQCLRQETSEECVFQELSYP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4331g00004 348 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi4331g00004 348 Gene3D - 7 68 - -
Gabi4331g00004 348 FunFam Transcription factor RAX3 70 147 - -
Gabi4331g00004 348 CDD SANT 71 113 IPR001005 -
Gabi4331g00004 348 PANTHER OS09G0431300 PROTEIN 1 274 - -
Gabi4331g00004 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi4331g00004 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi4331g00004 348 FunFam Transcription factor RAX3 7 68 - -
Gabi4331g00004 348 SMART sant 13 64 IPR001005 -
Gabi4331g00004 348 SMART sant 67 115 IPR001005 -
Gabi4331g00004 348 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gabi4331g00004 348 MobiDBLite consensus disorder prediction 143 158 - -
Gabi4331g00004 348 Gene3D - 70 141 - -
Gabi4331g00004 348 CDD SANT 16 62 IPR001005 -
Gabi4331g00004 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi4331g00004 348 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi4331g00004 348 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi4331g00004 348 MobiDBLite consensus disorder prediction 121 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4331g00004 Gabi-Chr4331 71210 72484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4331g00004 1 238 MYB Transcription Factor Family AT3G49690 57.422 5.05e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4331g00004 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4331g00004 K09422 - gmx:778079 502.286