Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4331g00001 ATGGGTTTTGATATTTCTAACCCAGGTCTTCGACTTGGCCTTTGTCTTGGCATCCACGATCAGTCATCAGAAGATAATTGCATAAAGACTGATGAACACAGGAAGAAACAAAGCCAGAAGAAAAAGGAGGAGTATCCATGTAATAAGTCATACCCATCTCTTACTTTAGGACCACCTGCTGATGAGGCAAATAATCAACTACCTTCAAAGACTGAATCGGATGAATATATCATCCACCCACACGCCTCTTCTCCAAGCGCAGTGTCTTCATTTTCCAATTCGTCTAGCATCAAGAGGGAGAGAGATCAATTCGCAGGCGAAGAACTTGAGCCAGAGGTAGAGAAGATTCAATCAAAGGTTGCTGATGATGATGAAGGTGGTAACCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCCACAGTCTTAGAGGATAGCTTCAAAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGGAAGCTGAATCTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAACTGAAAAAAACCGAAGTGGACTGTGAGTTACTGAAGAAGTGCTGTGAAACTCTAACAGAGGAGAACAAGAGGTTGCAAAAAGAGCTGCAAGAGCTCAAATCGATGAAAACAACGCCAGGATCCTTTTATATGCAGCTTCCAGTAGCCAGCCTTATCATATGCCCTTCTTGTGAGAGAATTTGCGGCGGCGGCAGCGGCGGCGGAAGTAACAATCCCTCCTCTCCCACGACGGCTTTGCTTAATGGCCCAAAGGCTCATCATCACTTCAACAAAAATAACTATACATATTCACCCAATCTTCCGCAGCTTGCTAGCTAG 870 0.4506 MGFDISNPGLRLGLCLGIHDQSSEDNCIKTDEHRKKQSQKKKEEYPCNKSYPSLTLGPPADEANNQLPSKTESDEYIIHPHASSPSAVSSFSNSSSIKRERDQFAGEELEPEVEKIQSKVADDDEGGNPRKKLRLTKEQSTVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKKTEVDCELLKKCCETLTEENKRLQKELQELKSMKTTPGSFYMQLPVASLIICPSCERICGGGSGGGSNNPSSPTTALLNGPKAHHHFNKNNYTYSPNLPQLAS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4331g00001 289 MobiDBLite consensus disorder prediction 24 47 - -
Gabi4331g00001 289 MobiDBLite consensus disorder prediction 250 264 - -
Gabi4331g00001 289 SUPERFAMILY Homeodomain-like 127 194 IPR009057 -
Gabi4331g00001 289 MobiDBLite consensus disorder prediction 100 137 - -
Gabi4331g00001 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 259 - -
Gabi4331g00001 289 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Gabi4331g00001 289 MobiDBLite consensus disorder prediction 249 268 - -
Gabi4331g00001 289 FunFam Homeobox-leucine zipper protein 18 114 191 - -
Gabi4331g00001 289 Gene3D - 123 191 - -
Gabi4331g00001 289 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Gabi4331g00001 289 MobiDBLite consensus disorder prediction 83 99 - -
Gabi4331g00001 289 Coils Coil 192 222 - -
Gabi4331g00001 289 SMART HOX_1 128 190 IPR001356 GO:0003677
Gabi4331g00001 289 MobiDBLite consensus disorder prediction 23 137 - -
Gabi4331g00001 289 CDD homeodomain 129 187 IPR001356 GO:0003677
Gabi4331g00001 289 SMART halz 186 230 IPR003106 GO:0006355|GO:0043565
Gabi4331g00001 289 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Gabi4331g00001 289 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4331g00001 Gabi-Chr4331 13465 15319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4331g00001 97 244 Homeobox Transcription Factor Family AT4G37790 64.516 1.63e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi4331g00001 Homeodomain 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4331g00001 K09338 - gmx:100790927 352.058