Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4330g00008 ATGATAGTTGCTATGGACTTGAATGCCTCGCCAGTCCCGGAGGAAGATGAAGATACTTTTGAGGAGAGGATACATGTTGAAGAGTTTACTGCACCTGAAGAACGCATAGAAAGTGGAGCTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGAAGGTTGAAGAGAGAGCGTTCAGATGACAGGCCCTTACATGTATCACAGTCACCTGGATATGATCAGCTGTTTCATGCTAAGAATCTTAAATCATATGATAAAAGTAGGCTTCCTCCGGGGTGGTTGGATTGCCCTTCATCTGGCCAGGAAATTTGTTGCATGATACCTTCTAAGGTTCCACTTGGTGAATCATTCAATGACTGCATTGTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGCAGAAAACTTGGTCTGGTGATTGATTTGACAAATACTTCTCGATACTATCCAGTGTCAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAGGGGGCGTGATTCTGTACCTGATAATTTATCTGTGAACCAGTTCGTCTATGAGGTTACACAATTTTTGGCACGTCAAAAACACTCAAAGAAGTATATACTCGTTCATTGTACACATGGGCATAATCGTACAGGATACATGATCATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGAAGCACGGCCTCCAGGAATCTACAAACCTGATTATATTGATGCATTGTACACATTTTATCATGAGAAAAAGCCTGAAATGGTAGTTTATCCTCCTACTCCGGAGTGGAAGAGATCTTCTGAATTTGATCTCAATGGTGAAGCAATCCCAGATGATGATGATGATGGAGTACCAGGCCCTGATTTGAATGAGAACAACGAGTTAGACGCACGAATGACAAATGATGATGTTTTAGGAGATGAGATACCTACTGATCAGCAAGATGCATTGCGACAGTTCTGTTATCAATCACTTAAATTGGGTGTTGGAGCCAGAGGACACACACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAACTTGCAGTTGTTGCGACAACGTTACTATTATGCAACGTGGAAAGCTGATGGCACACGATATATGATGCTAATAACGATGGATGGGTGTTACTTGATTGATAGAAATTTTAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGGTACAAATGATGGTTTGGGCGAGAAGACCCACCACTTCACGTTACTTGATGGAGAGATGGTTATTGATACATTGCCAGATTCGCAGAAGCAGGAGAGAAGATACCTTATATATGATCTGATGGCAATCAACCAAGTATCAGTAATAGAGCGACCCTTCTATGAACGTTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCAGGAACGACACAATATATACCAGAGCAGAAATCCTTACTATAGATATGACCTAGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTACTCTCTACTGTCACAAAACTTTTGAAGGAATTCATCAAAAGACTTTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTATATACCACGGACTCATGAAGGACTCTTAAAGTGGAAGTATGCTGATTTGAATTCAGTTGATTTTCTCTTTGAGGTTGATGGTGATCGCGAGCTACTTTTTATCTTTGAACGGGGAAAGAAGAAACTCATGGAAGGGAATAAGGTTGCATTCAGAGATGGTTCAGATCCCTCACTTTATTCCTCAAAGATCATAGAGTGTTCTTGGGATTTTGATAATCAAGAATGGAAATTTATTCGAGTAAGGACAGATAAATCAACTCCAAATGAGTTTAATACTTACAAGAAGGTGATGCGAAGTATAAGAGACAACATCACAGAGGATGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATCGATAGTAAAGCGAATCAGCATGTTAATGCGGCAAGGAGAAGGTGA 2052 0.4025 MIVAMDLNASPVPEEDEDTFEERIHVEEFTAPEERIESGADIARREREERKRRLKRERSDDRPLHVSQSPGYDQLFHAKNLKSYDKSRLPPGWLDCPSSGQEICCMIPSKVPLGESFNDCIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCRGRDSVPDNLSVNQFVYEVTQFLARQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVYPPTPEWKRSSEFDLNGEAIPDDDDDGVPGPDLNENNELDARMTNDDVLGDEIPTDQQDALRQFCYQSLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRGTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDLMAINQVSVIERPFYERWKMLEKEVIEPRNQERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEVDGDRELLFIFERGKKKLMEGNKVAFRDGSDPSLYSSKIIECSWDFDNQEWKFIRVRTDKSTPNEFNTYKKVMRSIRDNITEDDLLNEINEIIRLPMYADRIRIDSKANQHVNAARRR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4330g00008 683 Pfam mRNA capping enzyme, C-terminal domain 590 651 IPR013846 -
Gabi4330g00008 683 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Gabi4330g00008 683 PIRSF mRNA_capping_HCE 75 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gabi4330g00008 683 Coils Coil 40 60 - -
Gabi4330g00008 683 SMART dsp_5 123 263 IPR020422 GO:0006470|GO:0008138
Gabi4330g00008 683 FunFam mRNA capping enzyme family protein 85 299 - -
Gabi4330g00008 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 278 IPR029021 -
Gabi4330g00008 683 FunFam mRNA-capping enzyme 575 668 - -
Gabi4330g00008 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Gabi4330g00008 683 PANTHER MRNA-CAPPING ENZYME 84 665 - -
Gabi4330g00008 683 MobiDBLite consensus disorder prediction 23 64 - -
Gabi4330g00008 683 Gene3D - 591 660 IPR012340 -
Gabi4330g00008 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 118 267 IPR020422 GO:0006470|GO:0008138
Gabi4330g00008 683 FunFam mRNA capping enzyme, putative 314 551 - -
Gabi4330g00008 683 MobiDBLite consensus disorder prediction 286 309 - -
Gabi4330g00008 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Gabi4330g00008 683 Gene3D DNA ligase/mRNA capping enzyme 314 553 - -
Gabi4330g00008 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 316 554 - -
Gabi4330g00008 683 CDD RNA_5'-triphosphatase 92 258 - -
Gabi4330g00008 683 Gene3D Protein tyrosine phosphatase superfamily 65 284 IPR029021 -
Gabi4330g00008 683 Pfam mRNA capping enzyme, catalytic domain 355 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gabi4330g00008 683 SUPERFAMILY Nucleic acid-binding proteins 556 667 IPR012340 -
Gabi4330g00008 683 MobiDBLite consensus disorder prediction 1 70 - -
Gabi4330g00008 683 CDD Adenylation_mRNA_capping 326 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gabi4330g00008 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 609 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gabi4330g00008 683 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4330g00008 Gabi-Chr4330 83445 97714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4330g00008 1 683 Protein tyrosine phosphatase (PTP) family AT3G09100 68.360 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4330g00008 K13917 - gmx:100776633 1296.57