Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4330g00002 ATGGATTTACTCACACCAAGTGGCTACGATGTATTCTTGAGTTTCAGTGGAGAAAACTCATTCACTTCAACTCTCTGCAACTCTCTTCTAAATGCCGGAGCTACTTATTTTGTGGATGATGATAAGGAGTTTCAAAATCGAGATCAGAATTCAACCTCTCTACCGCCAGCAATCAGAAACTCTGAGAATTATTTCATTGTTTTCTCAAGAAATTATGCAGGTTCACGATTGTGTCTGCAAAAGTTGGAGGTAATAATGGAGCGTCAAAGAACCAAATTAGGGAAGGTCGTGCCAGTGTTCTATGGTGTAGATTCCTCAGAAGTATCTCATCAAAAAGGTGAGTTTGGAGAAGCATTTGATAAACTTTTGAACAGAATTTCCCCGGATGAAGACCAAGTGCTGAGTTGGAGGACGGCGCTTCGTGACGCTAGCGGCATTCCAGGGTTCGTTGTCGAACATTCTAGATATAATGGAAGTGAAAGTGAAGATATGGACAATGTAGTTGAGGTTATTACTCGTCTGCTAGATAAGGCATCCTTGTTTGTTACTGAGCATTCAGCGGGAGTAGAATCTCGTGCAGAAGAAGTGATTCGACTATTGAACAGCAAAAAATCAGAGCATTCTCTACTTCTAGGGATATGGGGGATAGGAGGGATTGGTAAAACAACAGTTGCCAAATACATCTATAAACAAATCGGTCGCAATTTTGATACAAGGAGCTTCATCCCAAAAGTTAGGGCAGTTTGGGAACAAAATAATGGCCAAATTTCTTTACAAGAACGGCCTCTTTCTGATATCTACGAAAAGATAGGTAAAATTGAAGCAGAAACAGTGATATTAAAGGAAAAACTTCGCCAAAAAAAATTACTTCTTGTGCTTGACGATGTGAATAAATTTGACCAATTGAAAGCTTTGTGTGGAAGTCGTGAATGGTTTGGTCCTGGAAGTGTAATAATCATCACAACAAGAGATGAGCATCTACTTCTTCAACTTGGAGTTGACCATGCACATAGAATGAAAGAAATGGACAAAAATGAATCTCTTGAACTTTTTAGTTGGCATGCGTTCAACCAAGCAAGTCCTGCTAAACGTCTTGAGGGCCTTTCTAATGTTATAGTTGAATATTCCAGGGGATTACCGCTAGTTCTTCAAGTCCTTGGGTCCTTTTTGTTTTGTAAAGGGAAAAACGAGTGGAATAGTGCATTGGAAAACTTAGTGGATGAAAGTGAAGATATCAGGAATATAGTTGAACGTGTTACTGGTTTGCTAGACGACACGGTTTTGTTTGTTGCTGAACATCCGGTGGGAGTAGAATCTCGAGTGCAAGATGTGATTCAACTATTGAACAACCAACAAACAAAACATCCTCTACTCCTAGGCATGTGGGGGATGGGAGGGGTTGGTAAAACAACCATTGCCAAAGCCATTTATAATGAAATTGGTCGCAATTTTCAGGCTAAGAGCTTCCTCCTAAATGTCAGGGAAGTTTGGGAACAAAATAATGGACAAGTTTCTTTACAACAAAGGCTTCTTTCTGATATCTACAAAACAACAAAATTGAAGATAGATACAACTGAATCAGGAAAAATGGAATTACAAAAGAGACTTAGCCAAAAAAGGATATTTCTTGTGCTTGACGATGTAGATAAATTGGACCAATTGAATGCTTTGTGTGGAGGTCGTGAATGGTTTGGTGGAGGAAGTAGAATAATCATCACAACAAGAGATGAACATCTACTTAGTGTGCTTAGAGTTGACCGCCTATACAGAATGAAAGAAATGAAGAAAAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCGTTCAAGCAAGCAAGTCCAAGGGAAGGTTTTGCTCATCTTTCTAGAGATGTAGTTGAATATTCCGGGGGATTGCCGTTAGCTCTTCAAGTACTTGGGTCCTTTTTGAATTCTAGGGGGATAAGGGACTGGGAGATTGCATTGGAAAAACTCAAAATCATTCCCAATCATGAAATACTGAGGAAGCTCAAAATAAGTTTTGATGGTTTAAGCGATGACAAAGTGAAAGAAATATTCCTTGATATAGCTTTTTTCTTTATTGGGAAGGATCGAGATGATGTAATTGAGATATTAAATGACTGTGGGCTTTTTGCAGAAATTGGAATAAGGGAACTTGCAGAAAAAAGTCTTGTAACTGTTAACATTAAGAACAGGCTCGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATTGTTCGGGAGAAATCACCAGAGTTGGCCGAGGAGCGCACTAGGTTATGGCTCCAAGAAGACGTGCTTGATGTGTTATCAAAAGATACTGGAACGATAGCTGTTAAGGGACTGACTTTGATGTTGCCAAGGATGGATACAACAACTGATTTGAAAACCAAAGCATTTGAGAAGATGAAGAGACTGAGATTGCTTCAACTTGCTGGCATACAACTTGATGGTGATTATAAATATCTTTCACAAGATCTTAGATGGCTTTGCTGGGATGGATTTCCTTCAGAATATACACCTGCAGACTTTCATCAAGGAAGTTTAGTTGCCATTGAGTTAAAGTATTCCAATATGCAACAAGTGTGGACGAAGTCCAAGATGCTGACGAAGCTGAAAATTCTCAATCTCAGTCATTCTCATAACTTGAGACAAACCCCAGACTTTTCGAAGATACCAAATCTGAAGAAGTTAATACTCAAAGATTGTCCACGTTTGTCTTCGGTTTCTGATACTATAGAACATCTCAAAGAAATTCTTCTGATAAATTTGAAAGACTGTACAGGCCTTAGTACACTTCCAAGAAGCATCTATAAGTTGAAGACGTTAAAAATTCTCATTATATCTGGATGTTCAAAAATTGACAAGTTGGAAGAGGACTTAGAACAGATGGAAAACTTAACCACCCTGATTGCAGATAATACTGATATAAATGAAGTGCCCTTTTCAATTGTGAGATCAAAAAGCATTGCATTTATTTCATTGTGTGGCTATAGAGGATCCTCACGTGATGTGTTTCCATCTCTTATATGGTCTTGGATGTCTCCAACAAACAGTGTCTTATCCCAAGTTCAAACATATGTGGGCATGTCATCTCTAGCTTTCTTAGATGAACAAAATAGTAGATTCCATGGTCAATCATATACTCTTAAAGACCTTCAGAAGCTTCAACGTCTTTGCGTGGAGTGTGACTCAAAAGTTCAACTACATGAAACTGTAGAAAGAATTTTGGATACTTTAAATACCACAAATTATGAGGAGTTGGAAGCAATGCCAAGCACATCACATGTATCAAATATCAAGACTTCAGCATTAATTGATTGTCACAGTCAAGCTCGCATTTCAGGATCAGAAAATTCCTTGACATCTCTTTTAATTCAAATGGGAATGAACTGCCATGTCACCAATATTCTTAGAGAAAACATTTTACAGAAAATGTCTACCGTCGGGCCTGGTTTCCTCCCTAGTGACAATTATCCTGATTGGTTAGCCTTCAGTGGTGATGGTTCTTCTGTAATTTTGGATGTCCCTCAAGTGCTGGAACGTAACTTGAAGACAATCATGTGCATTGTCTATTTTTCTTCCCCAGAGAACATGACACCAGAAGTCCTTAAAAATATGTTGGTGATAAATTACACAAAGAACACCATTCAGCTCTACAAGAGAGACGCATTAACCCCCTTTGAAGACGAGGAGTGGCAGAGAGTAGTATCAAATATAGAACCTGGTAACAAAGTCAATGTTGTTCTTGTTTTTGAGAACAGATTCATTGTGAATAAGACAACAGTTTTTCTCATATATGATGAACTGATTGACGAAAAAGGGGAGCACTGCCATACACCAGATAGAAATGCTATTGTTTCAGGTGGTGATGAAAATATTGAAAATTCGGGTCAGCCTTCCACTGAAGCTTTTCCTGCCGTGTCTGGGAAAGAAAAGCCAGGAGAAGTGTGCTGCTATGAAAGAACTACCACACCTACTCTGTTGAAAATAAATGAAGAAATGACGGAAATGGAGAAAATAAATGCTAATGAGGCCAAGCATTTAAATGAAAAGATTGAAGTGATAGAGGCAAAACATAATGAAATGGCAATAGTGGAGAAAAAGTTTCAACTTCAAAGGACTATGCTAAATCAAAAAAACTTAGGCCAAGATGTGGAGGCCTTGGCAGATTTGTTATCAACTACAGGTGATGCTACCGGTGTTCCATACAATCAAGAGGCACATTCAGAGCCTAGGGTTCATGCTGAGATGTATAAGGCTAAAAGTATTGAGGAGACTTCAAATGCATTGCCCAATTATTCTATGGCTAAGTGTATGAATGCTCTTAATGAGATTGAAGACGTTTCAGATGAGATCTATGTGAAAGCTTCAGAAAAATTTATGAATCCTGATCGGAGGGAAATGTTTCTTACGATGCCGATGAATAGGAGAAAGGCATGGCTAGATAGACTTCAATGA 4461 0.386 MDLLTPSGYDVFLSFSGENSFTSTLCNSLLNAGATYFVDDDKEFQNRDQNSTSLPPAIRNSENYFIVFSRNYAGSRLCLQKLEVIMERQRTKLGKVVPVFYGVDSSEVSHQKGEFGEAFDKLLNRISPDEDQVLSWRTALRDASGIPGFVVEHSRYNGSESEDMDNVVEVITRLLDKASLFVTEHSAGVESRAEEVIRLLNSKKSEHSLLLGIWGIGGIGKTTVAKYIYKQIGRNFDTRSFIPKVRAVWEQNNGQISLQERPLSDIYEKIGKIEAETVILKEKLRQKKLLLVLDDVNKFDQLKALCGSREWFGPGSVIIITTRDEHLLLQLGVDHAHRMKEMDKNESLELFSWHAFNQASPAKRLEGLSNVIVEYSRGLPLVLQVLGSFLFCKGKNEWNSALENLVDESEDIRNIVERVTGLLDDTVLFVAEHPVGVESRVQDVIQLLNNQQTKHPLLLGMWGMGGVGKTTIAKAIYNEIGRNFQAKSFLLNVREVWEQNNGQVSLQQRLLSDIYKTTKLKIDTTESGKMELQKRLSQKRIFLVLDDVDKLDQLNALCGGREWFGGGSRIIITTRDEHLLSVLRVDRLYRMKEMKKSESLELFSWHAFKQASPREGFAHLSRDVVEYSGGLPLALQVLGSFLNSRGIRDWEIALEKLKIIPNHEILRKLKISFDGLSDDKVKEIFLDIAFFFIGKDRDDVIEILNDCGLFAEIGIRELAEKSLVTVNIKNRLGMHDLLRDMGREIVREKSPELAEERTRLWLQEDVLDVLSKDTGTIAVKGLTLMLPRMDTTTDLKTKAFEKMKRLRLLQLAGIQLDGDYKYLSQDLRWLCWDGFPSEYTPADFHQGSLVAIELKYSNMQQVWTKSKMLTKLKILNLSHSHNLRQTPDFSKIPNLKKLILKDCPRLSSVSDTIEHLKEILLINLKDCTGLSTLPRSIYKLKTLKILIISGCSKIDKLEEDLEQMENLTTLIADNTDINEVPFSIVRSKSIAFISLCGYRGSSRDVFPSLIWSWMSPTNSVLSQVQTYVGMSSLAFLDEQNSRFHGQSYTLKDLQKLQRLCVECDSKVQLHETVERILDTLNTTNYEELEAMPSTSHVSNIKTSALIDCHSQARISGSENSLTSLLIQMGMNCHVTNILRENILQKMSTVGPGFLPSDNYPDWLAFSGDGSSVILDVPQVLERNLKTIMCIVYFSSPENMTPEVLKNMLVINYTKNTIQLYKRDALTPFEDEEWQRVVSNIEPGNKVNVVLVFENRFIVNKTTVFLIYDELIDEKGEHCHTPDRNAIVSGGDENIENSGQPSTEAFPAVSGKEKPGEVCCYERTTTPTLLKINEEMTEMEKINANEAKHLNEKIEVIEAKHNEMAIVEKKFQLQRTMLNQKNLGQDVEALADLLSTTGDATGVPYNQEAHSEPRVHAEMYKAKSIEETSNALPNYSMAKCMNALNEIEDVSDEIYVKASEKFMNPDRREMFLTMPMNRRKAWLDRLQ 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4330g00002 1486 Gene3D - 341 420 IPR042197 -
Gabi4330g00002 1486 Gene3D - 593 677 IPR042197 -
Gabi4330g00002 1486 Coils Coil 954 974 - -
Gabi4330g00002 1486 CDD AAA 435 591 - -
Gabi4330g00002 1486 Pfam TIR domain 9 162 IPR000157 GO:0007165
Gabi4330g00002 1486 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 149 IPR035897 -
Gabi4330g00002 1486 SMART AAA_5 207 331 IPR003593 GO:0016887
Gabi4330g00002 1486 SMART AAA_5 455 598 IPR003593 GO:0016887
Gabi4330g00002 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 409 IPR027417 -
Gabi4330g00002 1486 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 410 1094 IPR044974 GO:0006952
Gabi4330g00002 1486 Gene3D Ribonuclease Inhibitor 775 1150 IPR032675 -
Gabi4330g00002 1486 SMART till_3 8 146 IPR000157 GO:0007165
Gabi4330g00002 1486 SUPERFAMILY L domain-like 785 1128 - -
Gabi4330g00002 1486 Gene3D - 422 587 IPR027417 -
Gabi4330g00002 1486 Gene3D - 173 334 IPR027417 -
Gabi4330g00002 1486 SUPERFAMILY "Winged helix" DNA-binding domain 664 770 IPR036390 -
Gabi4330g00002 1486 Gene3D - 7 172 IPR035897 -
Gabi4330g00002 1486 PRINTS Disease resistance protein signature 628 642 - -
Gabi4330g00002 1486 PRINTS Disease resistance protein signature 867 883 - -
Gabi4330g00002 1486 PRINTS Disease resistance protein signature 458 473 - -
Gabi4330g00002 1486 PRINTS Disease resistance protein signature 535 549 - -
Gabi4330g00002 1486 Pfam NB-ARC domain 438 658 IPR002182 GO:0043531
Gabi4330g00002 1486 Pfam NB-ARC domain 190 415 IPR002182 GO:0043531
Gabi4330g00002 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 688 IPR027417 -
Gabi4330g00002 1486 ProSiteProfiles TIR domain profile. 7 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4330g00002 Gabi-Chr4330 10132 30119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4330g00002 435 945 WRKY Transcription Factor Family AT5G45050 31.423 9.66e-70 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4330g00002 - - lja:Lj0g3v0297389.2 1175.23