Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4320g00006 ATGGCAAGGCAAGAATCATTGTTGCCCTCTTCTTCCTTTAGCTTTGGATGGATATACGATGTGTTTCTCAGTTTTAGAGGCGAAGATAGTCGTCACGGTTTCATTGGCTATCTCTACAAAGCTCTTCATGACAGGGGAATCCACACCTTCATTGATGATAAAGAGCTTCAAAGAGGAGAGAAAATCACACCATCACTTATCAATGCAATTGAAGAATCAAGGATTGCCATCACTGTGTTCTCTAAGAACTATGCTTCTTCTTCCTTTTGCTTAAATGAACTTGCCCATATCCTTCACTGCATCAAGGAAAGGGGTCGGTTGGTTTTGCCAGTTTTCTATGACGTTGACCCTTCTCACGTGCGACATCAGAGTTGTAGCTATGAGGAAGCACTCGCTACTCATAAACAGAGGTTTAAGGATGACAAGGAGAAGCTACAAAAGTGGAGGAAGGCTCTGCGTCAAGCAGCTGACTTGTCTGGTTTTCATTTCAAACTTGGGTACTCTTTTATCTTCCTCTGTTTCAATGAATATGAGTTTGTTGGGAAGATTGTTAAAGAGGTCTCCGACAAGATTAATTGCTCTCCTTTACATGTTGCTGATTATCCAGTTGGATTGGAGTCTCAAGTGCCCAAAGTAATATCGCTTCTCAATTTCGGATCTGATGGAGTTCACATGATAGGGATCCATGGAATTGGTGGCATAGGGAAGACAACACTTGCTCGAGCAATTTATAATTTGATTGCCGAATCATTTGAAGCTTTGTGTTTTCTTGATAATATAAGAGAAAATTCTATTAAACATGGATTAGAACATATCCAAGAGACACTTATTTCTAAAGTATTTGGAGAGAGGCATATTAAGTTAGCAAGTTCCAAAGAAGGAATTTCAATCATAAAGCATAGGCTCCACAGAAAGATTGTTCTTTTGGTTCTTGATGATGTTGACAAACTGGAGCAGTTGCGGGCAACTGTTGGAGGACTTGATTGGTTTGGTTGTGGCAGCAAAATCATCATTACAACTAGGGACAAGCATTTGCTAACAAGTCATGGGGTTGAGAAAACTTATGAGGTAGATGGTTTGAGTAATAAAGAAGCTCTTGAATTACTTAGTTGGAATGCTTTTAAAACTGACAAAGTTAATTCGAGTTATGTGGACATTTTAAACCGTGCAATAACTTTTGCTTTTGGCCTTCCACTGGCTTTGGAGGTAATAGGTTCCTACTTGTTTGGGAAAAGGATAGAAGAATGGGAATCTGCATTAGATCAGTATGAGAGAATTCCTAATAAAGAGATCCAAAAGATACTTGAAGGAACTAGTAGTATCCAAATCATAATTTTGGAGTTCCTCAAATTTGAAGAAGTAGTTGAATGGGATGGAAACGCCTTCAAGGAGATGAAAAGCCTCAAAACAATTATTGTTAGAAAGGGTTGTTTTTTGGAAGGTCCCAAACATCTTCCAAATAGTTTGAGAGTACTGGAATGGTGGAGGTATCCTTCACCATCACTACCATCTACTTTTAATCAAAAGAATCTTATGATACTAGAGTTACCCCAAAGTCCCTTAATGTCAATTGATTTGCTCATGTCAAAGAAGAAGTTTGTGAATATGAACGTTTTGAATTTTGATCATTGTCAATGTATAACAGAGATACCTGATGTGTCTGGTGTCCCAAATTTAGAAGAATTATCATTTGGATATTGTGAGAATTTAATTAAAATTCACAAATCGGTTGGATTCCTAAATAAACTTAAAACCTTGAATGCTAATGGTTGCAAGAAGTTTAGGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAAAATCTCCAGCTTTCACATTGTCCTAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATGACGAAGCTTGATTTAAGTGGCACTCCCATAAAAGAACTTCCATTTTCAATTCAAAATCTCACTCGGCTTCAAAGACTAGAGCTGTCACGTTGTGGAATTGTTCAGTTACCAAGGAGCATTTCAATGATGCAAAAACTTCGTAAGTTGATTTTTAGGGAAAGTGAAGGATTTTTTATATCAAAACCGGATGAAGGTGAAGCACAAGTGAGCTCATTGGTGTTTGAGAACACTGTTGACGAATTCATTCGAAAAGGTCTCCCTTTGTTTGTCAATGTGCAATGGTTAAACTTAGCCAAGTGTAATTTCACAATTCTTCCTGCATGCTTCAAAGAATGTCTCTTATTGAGAGAAATTGATTTATATTGTTGCAAGAATTTTCGGGGAATTGGAGGGATTTCACCCAACTTAGAAACATTCATTGCAGTGGAGAGCACATCCTTGAAAGATTTAGACCTCACACTATTTCCTGAATGTTTGACGACACTTATTTTGCGTAATTGCGAGAATCTTCAAGAAGTTAGAGGGATTTCACCCAGCATAAGAACTTTGCAAGCAACCCAATGCCCATCCTTGACATCCGAGTGTAGAAGCATGTTACTGAATGAGGAATTGCACAAGGAGGGTGGAGACAAAGAGTTTCTTTTGTTAGAAACAAGGATTCCAGAGTGGTTTGAGCATCGTATAAATGAATCGTCAATTTCTTTCTGGTTTCGTAACATGGACTTCCCTGCGATATCTCTATGTTTTGCTATTCGACTCAATGAAAATTATGCCACGTTGTATCTCAATATTGAAGTCAACGGCATTTCAGAAGTTATAGGACAGGGTTTCTATTTGGATTGCAATCCAGGGAATGAGTATATAGTTCTTTATGATATAAAACAGGAAAAGTTCGTACATGATGCTGTTCTTCTAGAAGAAAATAAATGGAATTATGTGGTGTGTACTATATCAAAACGCACAAACAGAGTGTTTGTCAAACAAAGTGGAATCCATGTATTCAAACAAGGAAAGAGCATGGAGGACATTCAATTCACCAATCCACTGTTGTTGAAAGAAGAGCAAAGATTGGTGGACATGGCAGATTCTCAGAGACAATTTGTGCAGCACCAAAATACTTTGGCTTCATTGCCTTTATTGGAACCACAATTGGGACAGGGCACATAA 3054 0.3788 MARQESLLPSSSFSFGWIYDVFLSFRGEDSRHGFIGYLYKALHDRGIHTFIDDKELQRGEKITPSLINAIEESRIAITVFSKNYASSSFCLNELAHILHCIKERGRLVLPVFYDVDPSHVRHQSCSYEEALATHKQRFKDDKEKLQKWRKALRQAADLSGFHFKLGYSFIFLCFNEYEFVGKIVKEVSDKINCSPLHVADYPVGLESQVPKVISLLNFGSDGVHMIGIHGIGGIGKTTLARAIYNLIAESFEALCFLDNIRENSIKHGLEHIQETLISKVFGERHIKLASSKEGISIIKHRLHRKIVLLVLDDVDKLEQLRATVGGLDWFGCGSKIIITTRDKHLLTSHGVEKTYEVDGLSNKEALELLSWNAFKTDKVNSSYVDILNRAITFAFGLPLALEVIGSYLFGKRIEEWESALDQYERIPNKEIQKILEGTSSIQIIILEFLKFEEVVEWDGNAFKEMKSLKTIIVRKGCFLEGPKHLPNSLRVLEWWRYPSPSLPSTFNQKNLMILELPQSPLMSIDLLMSKKKFVNMNVLNFDHCQCITEIPDVSGVPNLEELSFGYCENLIKIHKSVGFLNKLKTLNANGCKKFRSFPPIKLTSLENLQLSHCPSLENFPEILGKMEKMTKLDLSGTPIKELPFSIQNLTRLQRLELSRCGIVQLPRSISMMQKLRKLIFRESEGFFISKPDEGEAQVSSLVFENTVDEFIRKGLPLFVNVQWLNLAKCNFTILPACFKECLLLREIDLYCCKNFRGIGGISPNLETFIAVESTSLKDLDLTLFPECLTTLILRNCENLQEVRGISPSIRTLQATQCPSLTSECRSMLLNEELHKEGGDKEFLLLETRIPEWFEHRINESSISFWFRNMDFPAISLCFAIRLNENYATLYLNIEVNGISEVIGQGFYLDCNPGNEYIVLYDIKQEKFVHDAVLLEENKWNYVVCTISKRTNRVFVKQSGIHVFKQGKSMEDIQFTNPLLLKEEQRLVDMADSQRQFVQHQNTLASLPLLEPQLGQGT 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4320g00006 1017 Pfam NB-ARC domain 207 434 IPR002182 GO:0043531
Gabi4320g00006 1017 Gene3D - 192 353 IPR027417 -
Gabi4320g00006 1017 ProSiteProfiles TIR domain profile. 17 191 IPR000157 GO:0007165
Gabi4320g00006 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 436 IPR027417 -
Gabi4320g00006 1017 Gene3D Ribonuclease Inhibitor 619 835 IPR032675 -
Gabi4320g00006 1017 Pfam TIR domain 19 190 IPR000157 GO:0007165
Gabi4320g00006 1017 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Gabi4320g00006 1017 Gene3D - 16 191 IPR035897 -
Gabi4320g00006 1017 PRINTS Disease resistance protein signature 600 616 - -
Gabi4320g00006 1017 PRINTS Disease resistance protein signature 301 315 - -
Gabi4320g00006 1017 PRINTS Disease resistance protein signature 394 408 - -
Gabi4320g00006 1017 PRINTS Disease resistance protein signature 225 240 - -
Gabi4320g00006 1017 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 431 IPR044974 GO:0006952
Gabi4320g00006 1017 SUPERFAMILY L domain-like 455 822 - -
Gabi4320g00006 1017 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 193 - -
Gabi4320g00006 1017 Gene3D Ribonuclease Inhibitor 463 618 IPR032675 -
Gabi4320g00006 1017 SMART till_3 18 158 IPR000157 GO:0007165
Gabi4320g00006 1017 SMART AAA_5 222 360 IPR003593 GO:0016887
Gabi4320g00006 1017 Gene3D - 359 445 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4320g00006 Gabi-Chr4320 89732 94644 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4320g00006 437 678 WRKY Transcription Factor Family AT4G12020 34.615 4.70e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4320g00006 - - vra:106764825 734.176