Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00082 ATGTATCATCCAAAAAATATTCCTAGTTCAAGTTTAATTGTAAGCAATTCATTAGTTCATGGTGAGCACATAGATTGTGGTGGCAGCCCAATGGAACCTGGCAATGGAGGAAACAGTCTCGGCAACAACTCTAATCTCTCTTCAAAACAACGTTTACGGTGGACACATGATTTACATGAGCGCTTTGTTGATGCTGTGTCACAACTTGGCGGGCCAGATCGTGCCACTCCCAAAGGTGTCCTCAGAGTTATGGGTGTACCAGGCTTAACTATTTATCATGTCAAAAGCCATTTACAGAAATACCGACTAGCTAAATACCTACCTGACTCCTCATCCGATGAGGGGAAAAAAGCCGACAAGAAAGAAACAGGGGAGATGCTTTCCAATCTAGACGGCTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTACGGATTGAAGCCCAGGGTAAGTATTTGAAAAAGATAATTGAAGAGCAACAGAGGCTGAGTGGGGTCCTTTCAGAGGGACCTGGCCAAGAACCTGATAATAAGACTGACCCGGCAACCCCCGACCCAGAAAAAGCTGCCAAAGAGCGTGCCCCAGCAAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCATTGACTCCAGATTCTGCATGCCCTGTTGGCTCCCCTGTTGACAGCCCTAAAATGGAGAGATCAACCAAGAAGCAACGAGTAAGCATGGAGGGGGCATATTCTAAACCAGACATGGTACTTCCACATCAGATACTGGAGTCAAGCATGCCATCATACCAGCAACCAAACTCTCTTTTCCTTGCTCAAGAGCCATATGATCCTTCTTTGGGTATATCTACCAGAAGTGGTGAGGAATTGGAGAAGGTTGGTGGCAGTAATCTGTGA 954 0.4539 MYHPKNIPSSSLIVSNSLVHGEHIDCGGSPMEPGNGGNSLGNNSNLSSKQRLRWTHDLHERFVDAVSQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGEMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEGPGQEPDNKTDPATPDPEKAAKERAPAKSLSIESFSSHHEPLTPDSACPVGSPVDSPKMERSTKKQRVSMEGAYSKPDMVLPHQILESSMPSYQQPNSLFLAQEPYDPSLGISTRSGEELEKVGGSNL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00082 317 Gene3D - 48 107 - -
Gabi4319g00082 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Gabi4319g00082 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Gabi4319g00082 317 MobiDBLite consensus disorder prediction 108 126 - -
Gabi4319g00082 317 MobiDBLite consensus disorder prediction 200 215 - -
Gabi4319g00082 317 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Gabi4319g00082 317 MobiDBLite consensus disorder prediction 108 132 - -
Gabi4319g00082 317 MobiDBLite consensus disorder prediction 185 266 - -
Gabi4319g00082 317 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Gabi4319g00082 317 Coils Coil 139 159 - -
Gabi4319g00082 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 46 305 IPR044848 GO:0003700
Gabi4319g00082 317 MobiDBLite consensus disorder prediction 285 317 - -
Gabi4319g00082 317 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Gabi4319g00082 317 FunFam Myb family transcription factor 48 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00082 Gabi-Chr4319 766472 774500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00082 84 317 G2-like Transcription Factor Family AT2G01060 64.198 3.85e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi4319g00082 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00082 - - gmx:100786925 514.227