Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00062 ATGGACTCGAAAACTAGTGCTAGAGCTCTCCCAAAACACCATCAAAAGACGGCTGAGATTCAAACCCTTGAGGCAAAAGACACAAGGCCTTCTTCACTGCCGGTTTCGAAGACGGCGAAACCTGAGCTGGCTGCACCTGAAGATCTATCAAAGTCTGTACAAAACACATCAAAGCAAAATACTGGGGAAATTTCGGAAAGCAAGAAGTTGGGAGCTCCAATCCAAAAGGGGTCTGCTGAATCTTTGAGTAATAAATGTGGTTCTGGTGCTTCCTCATCCATTCCCAACAAAGCATCTGGAGAAGTGGATCATGCTGTTACTGGGAACATAGGCTCACAGGAAAGCTCTGTTGATCAAGACAAAAAGACATCTGAATATGGAAGTGTGAAGAGCAGTTCTGTTTCTGCCAAAGTTAGTGATGGGACCAGCAGTCTTGCAAAGACAAGTGGAAGTGCAAAGACAAGTGGAAGTGCCAAGATCAGTGATCGAGCTGATTTTGTCGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGTTTTAGTAGCAGCATAAACAAGCCTCACAAGGCAAATGACTTGAGATGGGAAGCTATCCAAGCTGTTCGAACTAGAGATGGTGCATTGGGTTTAGGTCACTTTAGACTACTGAAGAGGTTGGGTTGTGGGGATATTGGCAGTGTATACCTCTCTGAGTTGAGCGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCAAGTCGTAAAAAGCTACTTCGTGCTCAGACAGAAAGAGAAATTCTTCAGTCACTTGATCACCCTTTCCTCCCCACTTTGTACACCCATTTTGAGACAGAGAAATTCTCATGCTTGGTGATGGAATTCTGCCCAGGTGGAGACCTCCATACTCTCAGGCAAAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTACTGGCTTTGGAGTACCTCCACATGCTTGGGATTGTCTACCGTGATCTTAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCTGACTTTGACCTTTCCCTGCGATGTACTGTTAGTCCAACCCTTGTTAAAACCTCATCCATGGATTCTGAGCCTTTAAGAAAGAATCCTGTTTACTGTGTCCAGCCTGCATGTATTGAGCCACCTTCCTGCATCCAACCATCCTGCGTTGCTCCTACCACATGCTTTTCTCCACGCCTCTTTTCTAGCAAATCAAAGAAGGACAGGAAGCCCAAAAATGAAATTGGCAACCAAGTTAGTCCATTACCTGAGCTCATTGCAGAGCCTACCGATGCGCGGTCTATGTCATTTGTTGGAACCCACGAGTACTTGGCACCTGAGATCATTAAGGGTGAAGGGCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGTAAAACACCTTTCAAGGGATCTGGGAACCGAGCTACTTTGTTTAATGTTGTAGGTCAGCCCTTGCGATTTCCAGAATCACCTGTTGTGAGTTTTGGAGCTAGGGATCTTATAAGGGGGTTGCTTGTGAAGGAACCTCAGCACAGATTGGCATATAAACGTGGTGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATACGTTGTGCTACCCCACCTGAGATCCCAAAGCCAGTAGAGTTTGAGAAGATACCTTCCCCAGCCTCATCATCATCTGGCGAAAAGGCTGTTAACCATATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1866 0.4486 MDSKTSARALPKHHQKTAEIQTLEAKDTRPSSLPVSKTAKPELAAPEDLSKSVQNTSKQNTGEISESKKLGAPIQKGSAESLSNKCGSGASSSIPNKASGEVDHAVTGNIGSQESSVDQDKKTSEYGSVKSSSVSAKVSDGTSSLAKTSGSAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVSPTLVKTSSMDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKNEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFGARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKIPSPASSSSGEKAVNHMSIANQKGSDNYLEFDFF 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00062 621 Gene3D Transferase(Phosphotransferase) domain 1 457 581 - -
Gabi4319g00062 621 PANTHER FLIPPASE KINASE 1-RELATED 54 587 - -
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 126 158 - -
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 49 66 - -
Gabi4319g00062 621 FunFam Serine/threonine-protein kinase D6PK-like 223 308 - -
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 1 199 - -
Gabi4319g00062 621 Pfam Protein kinase domain 226 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4319g00062 621 Pfam Protein kinase domain 460 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4319g00062 621 ProSiteProfiles Protein kinase domain profile. 225 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4319g00062 621 SMART serkin_6 225 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 77 98 - -
Gabi4319g00062 621 Gene3D Phosphorylase Kinase; domain 1 223 308 - -
Gabi4319g00062 621 CDD STKc_phototropin_like 224 587 - -
Gabi4319g00062 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 172 199 - -
Gabi4319g00062 621 SUPERFAMILY Protein kinase-like (PK-like) 201 591 IPR011009 -
Gabi4319g00062 621 FunFam serine/threonine-protein kinase D6PK-like 309 376 - -
Gabi4319g00062 621 Gene3D Transferase(Phosphotransferase) domain 1 309 384 - -
Gabi4319g00062 621 MobiDBLite consensus disorder prediction 429 448 - -
Gabi4319g00062 621 FunFam Serine/threonine-protein kinase AGC1-7 456 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00062 Gabi-Chr4319 557678 562580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00062 39 621 AGC Kinase Gene Family AT5G47750 77.055 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi4319g00062 Pkinase 1.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00062 K08286 - gmx:100781600 1062.37