Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00052 ATGTTGCCAAGTGCTAAACACAGTTCATCTCTTCACTTGGGTAGGACTATAATGAGTGAACAGCTGGGGCTGCTAAAAGTCTTAGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGAGCAGTGATCCTTATGTTGTGCTCAAACTAGGGAATCAGACCGCAAAGACCAAGGTCATTAATAGCTGTTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTGACTGAACCCTTGGGAGTTCTGAATTTGGAAGTATTTGATAAAGATCTTTTGAAGGCTGATGACAAGATGGGAAATGCTTTCCTCAACCTTCAACCATTAGTGTCTGCAGCTAGATTGAGAGATATTTTAGGAGTCTCCTCTGGTGAGACAACTATAAGGAAGGTGATACCTGATGGTGAAAACTGTCTTGTCCGTGAAAGCAGTATCAATTGTGTTAATGGTGAGGTTGTGCAGAATGTTTGGTTAAAGCTTCGTGGAGTAGAGTCTGGGGAGATAGAATTGACGATCAAGTTGATCACACCTGTTGCTTCCTCAGTATAG 552 0.4221 MLPSAKHSSSLHLGRTIMSEQLGLLKVLVVQGKRLVIRDFKSSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPLVSAARLRDILGVSSGETTIRKVIPDGENCLVRESSINCVNGEVVQNVWLKLRGVESGEIELTIKLITPVASSV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00052 183 SMART C2_3c 24 119 IPR000008 -
Gabi4319g00052 183 ProSiteProfiles C2 domain profile. 3 120 IPR000008 -
Gabi4319g00052 183 Pfam C2 domain 24 115 IPR000008 -
Gabi4319g00052 183 PRINTS C2 domain signature 63 76 IPR000008 -
Gabi4319g00052 183 PRINTS C2 domain signature 84 92 IPR000008 -
Gabi4319g00052 183 PRINTS C2 domain signature 39 51 IPR000008 -
Gabi4319g00052 183 Gene3D C2 domain 20 181 IPR035892 -
Gabi4319g00052 183 CDD C2_ArfGAP 22 167 - -
Gabi4319g00052 183 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 20 176 IPR035892 -
Gabi4319g00052 183 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 21 177 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00052 Gabi-Chr4319 495588 499229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00052 7 176 C2H2 Transcription Factor Family AT4G05330 44.767 1.93e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00052 - - gmx:100779624 298.901