Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00045 ATGGACCTCTTCGCCGCCGACCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCCGATTCCGGCGACCACCTTTACTCCGCCGCCGACCTCCTCCTTCAAAGCCGCCATAACCCCCAGAAGCTCCGCCCCATCAGGTCCAACGGAGGCCCACCTCCCTCCGGTTTCCATCCCTGCCCTGACTCAACTCAGCATCCGGGCCACCCTCTAGAACCATCGCTCCAGATGCAGGATCCGATTGCGTCCGGGTCGGGTCATGCCCCGTTTCCCTCGGGGCAGGAATCTGGTTCATCATTGGACGATGATGATGATGATGATGAGTACGACAACTCATCAGCAAGTACTAAAGTACCTGGCTCTAGAAAGAGGAAGAGAAAAACAGTGAGAAAGCTTGAAGGTTTTGTAGAAAATTTGGTAAAGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAACAATTGATGGAGATGATAGAAAGCAAGGAAAGGGAAAGAATAAAGAGGGAAGAAGCTTGGAAGCAAGAGGAGATGGAAAGGATTAAAAAAGATGAAGAGGTTAGGGCCCAAGAAAGGTCTCGTAATTTAGCCCTCATAGCTTTCATTCAGAATCTATTGGGCCATGAAATTCAAATCCCCCAACCAGCAGAAGTAAGCAATATAAGAGAAGATGATGAAGTTGAGGTGAACATTCAAAAAGATTTCAACAGTGATCTAAGTAACAATAGATGGCCTGTTGCTGAAGTACAAGCACTCATAACTGTAAGAACTTCATTGGACCACAAGTTTCGTCTTATGGGGTCCAAAGGATCATCAATATGGGAGGAGATATCAGGAGCAATGCATAGCATGGGATACAATCGTTCTGCAAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAAAGGACAGTGGGAAGCGGCAAGAAAAGGCGTGAAAATAGTAAAACTTGCCCTTACTTTGATGAGTTGGACATTCTGTATAGAAACGGGCTCCTCAATCCTGGAAATGTATTGAGCAATAGCAACAATGTTTCCAGGATTGAAGAAAAGGACTTGACTCAAACTTCATAA 1077 0.4596 MDLFAADHFPVPDHVAPFPDSGDHLYSAADLLLQSRHNPQKLRPIRSNGGPPPSGFHPCPDSTQHPGHPLEPSLQMQDPIASGSGHAPFPSGQESGSSLDDDDDDDEYDNSSASTKVPGSRKRKRKTVRKLEGFVENLVKKVMEKQEQMHKQLMEMIESKERERIKREEAWKQEEMERIKKDEEVRAQERSRNLALIAFIQNLLGHEIQIPQPAEVSNIREDDEVEVNIQKDFNSDLSNNRWPVAEVQALITVRTSLDHKFRLMGSKGSSIWEEISGAMHSMGYNRSAKKCKEKWENINKYYKRTVGSGKKRRENSKTCPYFDELDILYRNGLLNPGNVLSNSNNVSRIEEKDLTQTS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00045 358 Coils Coil 143 163 - -
Gabi4319g00045 358 Pfam Myb/SANT-like DNA-binding domain 240 326 IPR044822 -
Gabi4319g00045 358 FunFam Trihelix transcription factor GT-2 242 304 - -
Gabi4319g00045 358 PANTHER FI21293P1 78 345 - -
Gabi4319g00045 358 CDD GT1 240 305 - -
Gabi4319g00045 358 Gene3D - 242 304 - -
Gabi4319g00045 358 ProSiteProfiles Myb-like domain profile. 234 299 IPR001005 -
Gabi4319g00045 358 MobiDBLite consensus disorder prediction 35 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00045 Gabi-Chr4319 397731 399817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00045 23 331 Trihelix Transcription Factor Family AT5G47660 37.222 1.02e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi4319g00045 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00045 - - gmx:100820302 457.218