Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00043 ATGGCTGAATCTGATAATGAGTCAGGAGGTCAAAGAGGTAATTACAACGGAAGTGGAAACAATGAATTAACAGGGTGCAGAGAGCAAGACAGGTTCCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGCTTTACCAGCAAACGCAAAGGTCTCAAAGGAAGGCAAAGAGACAGTGCAAGAGTGTGTGTCAGAGTTTATAAGCTTCATAACAGGGGAAGCGTCTGATAAGTGCCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTATTGTGGGCCATGACAACACTGGGTTTCGAAGAGTATGTGGGTCCTCTTAAGATTTACCTTCACAAGTATAGAGAGATGGAAGGGGAGAAGATAACTACTACTACTGCTGCTATCATGGGGAGGCCACAGGGTGATGATGGGAATGATGGTGGTGAGGGTTATGGTCATGGTGTGCCATCTCCTATGATGATGATGATGATGATGGGGCATCAGCATGAAGGACGTCACACGTATGGATCTGGAAGTGGATCAGCATCTTCTGGAAGGACTATTAGCTAG 555 0.4595 MAESDNESGGQRGNYNGSGNNELTGCREQDRFLPIANVSRIMKKALPANAKVSKEGKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVGPLKIYLHKYREMEGEKITTTTAAIMGRPQGDDGNDGGEGYGHGVPSPMMMMMMMGHQHEGRHTYGSGSGSASSGRTIS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00043 184 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4319g00043 184 MobiDBLite consensus disorder prediction 1 26 - -
Gabi4319g00043 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4319g00043 184 MobiDBLite consensus disorder prediction 131 154 - -
Gabi4319g00043 184 SUPERFAMILY Histone-fold 29 122 IPR009072 GO:0046982
Gabi4319g00043 184 FunFam Nuclear transcription factor Y subunit B-3 21 143 - -
Gabi4319g00043 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Gabi4319g00043 184 MobiDBLite consensus disorder prediction 165 184 - -
Gabi4319g00043 184 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4319g00043 184 MobiDBLite consensus disorder prediction 169 184 - -
Gabi4319g00043 184 Gene3D Histone, subunit A 21 138 IPR009072 GO:0046982
Gabi4319g00043 184 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Gabi4319g00043 184 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Gabi4319g00043 184 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00043 Gabi-Chr4319 373736 374701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00043 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.200 6.36e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4319g00043 CBFD_NFYB_HMF 5.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00043 K08065 - gmx:100305641 249.595