Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00041 ATGGGGAATGTGAATGGGAGAGATGATGTGAACGGTACTCAATCTGGGACTGAAGAAGAAGAAGAAGAAGAAGAAGGTTGTGACAGTGTGAGCGATGGCATGTCTGCACCTGATGGGGTTGGGAACCCTGCACCTTCTGAGTTGATGGGTCAATCTCCTCCTGCTAGCCCTAGAGCAACCCAATCTCCATTAATGTTCGCCCCTCAAGTCCCGGTGGTTCCACTACAAAGGCCTGATGAGATGCATGTTCCAAGCCCTTCCTGGATGCAAACTACTTCAGGGCATGAGGATATGTACAGTGAACTAGGAATTCCAACAATGATTACTTGGAGTTATGATGGGAAAGAAGTAGCTGCGGAGGGCTCATGGGATAATTGGAAAACAAGAATGCCCTTGCAGAGATCAGGGAAGGACTTCACAATAATGAAGGTACTGCCATCTGGTGTTTACCAGTTTAGATTTATTGTGGATGGACAGTGGAGGTATGCACCTGACTTGCCTTGGGCCCAAGATGATGCTGGGAATGCTTACAACATTCTGGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCTGAAGATTTTGCAAAGGAACCGCCGTTGGTTCCTCCATTCTTGCAAATGACACTTCTTAATGTTCCTTCAACAAATATGGAAATTCAACCTCTTATATCCAGACCTCAGCATGTACTGCTCAATCATCTTTACATGCAGAAAGGAAAGAGCAGCCCTTCAGTTGTTGCACTTGGTTCAACTCATCGGTTCCTAGCCAAATATGTCACTGTTGTGCTGTACAAGTCTTTGCAGAGGTAA 876 0.4463 MGNVNGRDDVNGTQSGTEEEEEEEEGCDSVSDGMSAPDGVGNPAPSELMGQSPPASPRATQSPLMFAPQVPVVPLQRPDEMHVPSPSWMQTTSGHEDMYSELGIPTMITWSYDGKEVAAEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDFAKEPPLVPPFLQMTLLNVPSTNMEIQPLISRPQHVLLNHLYMQKGKSSPSVVALGSTHRFLAKYVTVVLYKSLQR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00041 291 MobiDBLite consensus disorder prediction 15 29 - -
Gabi4319g00041 291 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 291 IPR043554 -
Gabi4319g00041 291 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 217 287 IPR006828 GO:0005515
Gabi4319g00041 291 Pfam Glycogen recognition site of AMP-activated protein kinase 104 183 IPR032640 -
Gabi4319g00041 291 CDD E_set_AMPKbeta_like_N 105 181 - -
Gabi4319g00041 291 Gene3D - 192 289 - -
Gabi4319g00041 291 SMART AMPKBI_2 199 289 IPR006828 GO:0005515
Gabi4319g00041 291 SUPERFAMILY AMPKBI-like 186 288 IPR037256 -
Gabi4319g00041 291 Gene3D Immunoglobulins 99 186 IPR013783 -
Gabi4319g00041 291 MobiDBLite consensus disorder prediction 1 62 - -
Gabi4319g00041 291 SUPERFAMILY E set domains 104 189 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00041 Gabi-Chr4319 359909 363285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00041 103 184 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 8.40e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00041 K07199 - gmx:100777497 524.242