Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00034 ATGACATCCATACCTTCGAAAAATCTATGGATTCGAAAGCAACAGTGCCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATGCTGAGGAGGGTTCTGCAGCACCAGAATTGGTGAAGGCAGAAAAAGCATCATCTGGAGCTATGATTACCCCCTATGTTGGAATGGTGTTCAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAAGAAAGATCTAGAATTAGCCCTCAGTTGGGCATTTACAAGCGTGACTTTGTTTGTTACCGGTCTGGATTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAAATGTATTTGTCTAAGGAGGTTGTAGAAGGGGTTTCCCAATGGTTTGTTGTGCAGTTTAGTAATGTACACAATCATGAACTTTTGGAAGATGATCAAGTGCGCCTTCTTCCTGCTTATCGTAAAATTCATGAGGCTGATCAAGAACGTATACTCTTGCTTTCCAAAGCTGGGTTTCCAATACATCGGATAGTGAAAATGCTTGAGCTCGAAAAGGGGATTCAAGGTGGGCAGCTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGTAAGAAGGTTGTCCAAGAGAATGAGGCATTGCTCTGTGAGAAAAGAGAAAATGATATATTGGAACTTCTTGAGGCATGCAAAGATAGCTATGGTAGAACCATTTTTTTTGGTTGTGTTTTATTGCAGGATGAAACACCCCAGTCCTTCTCATGGGCATTGCAGACTTTTGTCCGGTTCATGAGAGGAAGATGTCCACAAACAATTCTAACTGATCTAGACCCTGGGCTTAGAGATGCCATTAGAAGCGAATTTCCAGGAACTAAACATGTCATTCCTCAGTGGAATATTCTATACAAAGTACCCAGCTGGTTTTCTATTCCTCTCGGGTCTCGCTATGCAGAATTCAAATCCGAGTTCGATGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAGTGGAGCCAAATGATTTCTGTGTTTGGGCTTGGTTCAGATAAACATACTGATTTACTGTATTCTGTTCGGGCATCCTGGGCACAACCCTATGTAAGAGGTTACTTTCTGGCTCGAATGGCGACAATAGCTTACTCGAAGTCTATAGATGCATTTTTGAAAGGAATATTCACTGCACATACATGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAATTTTCAACATCAAGCACATCAGGAGGCTCAATATATACATCTCAAAACTTGCATACCCATTGAAGAGCATGCACGAAGTATTCTCACGCCTTTTGCTTTTAATGCTTTGCAGCAAGAATTATTGCTTGTAATGCAATATGCTACTTCTGAGATGGCCAATGGATCATATATTGTACGGCACTTCAAAAGGATGGATGGGGAAAGGCTAGTAATATGGTTGGCTGAAGACGAACAGATACACTGCTCTTGCAAGGAATTTGAATCCTCAGGAATATTATGCAGACATGCTCTTCGTGTATTTGTAATAAAAAACTACTTTCAGCTCCCTGACAAATACTATTTAAGTAGATGGAGACCGGAATGCTCTTTACTTGTTGTTGATGATGATGATCATAATAGTCAAAGTGTTGGTGGGGAATGGTTTCAAGAATATCAGTCCCTAGCTGAAACTTTGTTTTCGGAATCATCAATTACAAAGGAGCGATCTGACTATGTTCGTAGAGAACTGACAAAAGAACTTACTAGGATTCTTAATGAGGTTAGAAATCTGCCTGAGACTGGTGGAGTCTGCATGAACATGACTGTTTCGCCAACCAGCTAG 1893 0.4089 MTSIPSKNLWIRKQQCPCGDWKCYITYEGDAEEGSAAPELVKAEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLCEKRENDILELLEACKDSYGRTIFFGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIRSEFPGTKHVIPQWNILYKVPSWFSIPLGSRYAEFKSEFDALFHIENTEEFELQWSQMISVFGLGSDKHTDLLYSVRASWAQPYVRGYFLARMATIAYSKSIDAFLKGIFTAHTCLRSFFEQVGISANFQHQAHQEAQYIHLKTCIPIEEHARSILTPFAFNALQQELLLVMQYATSEMANGSYIVRHFKRMDGERLVIWLAEDEQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYYLSRWRPECSLLVVDDDDHNSQSVGGEWFQEYQSLAETLFSESSITKERSDYVRRELTKELTRILNEVRNLPETGGVCMNMTVSPTS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00034 630 ProSiteProfiles Zinc finger SWIM-type profile. 500 535 IPR007527 GO:0008270
Gabi4319g00034 630 Pfam SWIM zinc finger 507 531 IPR007527 GO:0008270
Gabi4319g00034 630 SMART 26again6 510 537 IPR006564 GO:0008270
Gabi4319g00034 630 Pfam MULE transposase domain 248 319 IPR018289 -
Gabi4319g00034 630 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Gabi4319g00034 630 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 598 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00034 Gabi-Chr4319 289793 292886 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4319g00034 FAR1 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00034 - - egr:104441501 899.042