Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00029 ATGGGTCGTTCTCGTGGAAATTTTCACCCCGCCGATGAGGATCCCAACCAAAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTCAGAATCTGGAGCAGCAGGTCAAGGAGCAAGTGAAGGAAAAAAGGCTTTGTACCACTGCAATTATTGTAATAAAGATATTACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCGGATTTTGACTTATGTATAGAGTGTTTCTCTGTTGGAGCTGAGGTGACACCCCATAAAAGCAATCATCCTTACAGGGTTATGGACAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGCATGCAGATGATGAAATTCTGCTTCTCGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGCATACCTGAAGTCCCCGTTCTTTCCTCTTCCGGATATGTCTCATGTTGTGGGGAAAAACAAAAATGATCTTCTTGCCATGGGAAGGGGGCTGGGCGAGGACAAAAAAGGAATTTCCATGGCGGATCTTAGTTTAAAAGAAGATTCTCCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGTTGATTCTCTAGCAGACAGAGATTTTGGAGGAAAGAAGCCAAGTTCCTCAGGAAATGAAGGCTCCTCTTTAGTAGAAATGAGTGGTTATAACCCAAAAAGACAGGAATTTGATACTGAATATGATAATGATGCCGAACAACTACTCGCTGACATGGAATTTAAGGATACTGACACTGAGGAAGAGCGAGAGCTGAAACTACGTGTATTGCGTCTATATTCAAAAAGGCTTGATGAAAGAAAACGTAGAAAGGATTTCGTACTTGAAAGAAACTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAAAAGACAATATGTCGGAAATATGACTGGTTCATGCGCTTTCATACCAAGGAAGAGCATGAGGAATTGCTTAGAACAGTTATCTCTGAGCACAGAACTCTTAAAAGAATCCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCGGATAGATATCTGGTACATAAGAGAAGAAGGGAATCTGAAGAAAGTGCTCGTAGGGCTAAAGGTAGTGCTCAGGTTGGCCCAAGTAATCAGGGGGATTTGAGTGCAAGACCTACGGGGCCTGCTACTTCAAGTTCTGTCAATGAAATGGATGTGACGGGATACTATGGGGCAGATTTACTTTCTGAACCTGAAAAACGTTTGTGCTGTGATATGAGGTTGCCGCCAGCCATTTATCTGAAGATGCAAGAGCAACTGTCTCTACAAATACTTGGTGGCACTGTCTCTGCTAAATCGGATGCTCATCAATTGTTCAAGATGGATACCATCAAAATTGACAGGGTCTTTGATATGCTCATCAAAAAGGGAATTGGTTCACCCTGA 1494 0.425 MGRSRGNFHPADEDPNQRSRRKKNAASGENSESGAAGQGASEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWHADDEILLLEGIEMYGLGNWTEVAEHVGTKNKEACIEHYRNAYLKSPFFPLPDMSHVVGKNKNDLLAMGRGLGEDKKGISMADLSLKEDSPFSPSRVKVEDSHKVDSLADRDFGGKKPSSSGNEGSSLVEMSGYNPKRQEFDTEYDNDAEQLLADMEFKDTDTEEERELKLRVLRLYSKRLDERKRRKDFVLERNLLYPNPFEKDLTPEEKTICRKYDWFMRFHTKEEHEELLRTVISEHRTLKRIQELKEARAAGCRNSAEADRYLVHKRRRESEESARRAKGSAQVGPSNQGDLSARPTGPATSSSVNEMDVTGYYGADLLSEPEKRLCCDMRLPPAIYLKMQEQLSLQILGGTVSAKSDAHQLFKMDTIKIDRVFDMLIKKGIGSP 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00029 497 SMART sant 104 153 IPR001005 -
Gabi4319g00029 497 FunFam Transcriptional adapter 41 96 - -
Gabi4319g00029 497 Pfam Myb-like DNA-binding domain 108 149 IPR001005 -
Gabi4319g00029 497 MobiDBLite consensus disorder prediction 1 39 - -
Gabi4319g00029 497 CDD SANT 108 149 IPR001005 -
Gabi4319g00029 497 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Gabi4319g00029 497 SMART zz_5 44 89 IPR000433 GO:0008270
Gabi4319g00029 497 SUPERFAMILY Homeodomain-like 403 494 IPR009057 -
Gabi4319g00029 497 Gene3D - 412 495 IPR036388 -
Gabi4319g00029 497 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Gabi4319g00029 497 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 492 - -
Gabi4319g00029 497 FunFam Transcriptional adapter 2 101 153 - -
Gabi4319g00029 497 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Gabi4319g00029 497 CDD ZZ_ADA2 48 96 IPR041983 -
Gabi4319g00029 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Gabi4319g00029 497 Gene3D - 102 153 - -
Gabi4319g00029 497 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Gabi4319g00029 497 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Gabi4319g00029 497 MobiDBLite consensus disorder prediction 194 239 - -
Gabi4319g00029 497 ProSiteProfiles SWIRM domain profile. 411 497 IPR007526 GO:0005515
Gabi4319g00029 497 SUPERFAMILY RING/U-box 48 111 - -
Gabi4319g00029 497 MobiDBLite consensus disorder prediction 393 418 - -
Gabi4319g00029 497 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4319g00029 497 FunFam Transcriptional adapter 2 412 496 - -
Gabi4319g00029 497 Gene3D - 39 96 IPR043145 -
Gabi4319g00029 497 MobiDBLite consensus disorder prediction 201 221 - -
Gabi4319g00029 497 PIRSF Txn_adaptor_ADA2 35 497 IPR016827 GO:0003713|GO:0006357|GO:0035065
Gabi4319g00029 497 MobiDBLite consensus disorder prediction 376 418 - -
Gabi4319g00029 497 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00029 Gabi-Chr4319 250023 256488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00029 1 495 EF-hand Containing Proteins AT3G07740 46.655 1.74e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4319g00029 Myb_DNA-binding 9.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00029 K11314 - gmx:100811887 847.81