Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00028 ATGGGTCGTTCTCGTGGAAATTTTCACCCCGCCGATGAGGATCCCAACCAAAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTCAGAATCTGGAGCAGCAGGTCAAGGAGCAAGTGAAGGAAAAAAGGCTTTGTACCACTGCAATTATTGTAATAAAGATATTACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCGGATTTTGACTTATGTATAGAGTGTTTCTCTGTTGGAGCTGAGGTGACACCCCATAAAAGCAATCATCCTTACAGGGTTATGGACAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGCATGCAGATGATGAAATTCTGCTTCTCGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAAGAAGCATGCATAGAACACTATAGGAATGCATACCTGAAGTCCCCGTTCTTTCCTCTTCCGGATATGTCTCATGTTGTGGGGAAAAACAAAAATGATCTTCTTGCCATGGGAAGGGGGCTGGGCGAGGACAAAAAAGGAATTTCCATGGCGGATCTTAGTTTAAAAGAAGATTCTCCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAGTTGGTTCCTCTGGCCGTTTGCCTTCCAGTTCAAAGTCAGAGTCAGAATCTGCCCCCTCTGGTATCAAACATGCTGCAGCTGGTGCTAACCAGAAGGCATCTAATGTGTCCCGTGGAAAAGGTGGTCCTGGAGTCATTAAAATGGAAGATTCTCTAGCAGACAGAGATTTTGGAGGAAAGAAGCCAAGTTCCTCAGGAAATGAAGGCTCCTCTTTAGTAGAAATGAGTGGTTATAACCCAAAAAGACAGGAATTTGATACTGAATATGATAATGATGCCGAACAACTACTCGCTGACATGGAATTTAAGGATACTGACACTGAGGAAGAGCGAGAGCTGAAACTACGTGTATTGCGTCTATATTCAAAAAGGCTTGATGAAAGAAAACGTAGAAAGGATTTCGTACTTGAAAGAAACTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAAAAGACAATATGTCGGAAATATGACTGGTTCATGCGCTTTCATACCAAGGAAGAGCATGAGGAATTGCTTAGAACAGTTATCTCTGAGCACAGAACTCTTAAAAGAATCCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCGGATAGATATCTGGTACATAAGAGAAGAAGGGAATCTGAAGAAAGTGCTCGTAGGGCTAAAGGTAGTGCTCAGGTTGGCCCAAGTAATCAGGGGGTTCCGAATGCATTATTGTCTCCAGACTCTGCTGGGAAGGATTTGAGTGCAAGACCTACGGGGCCTGCTACTTCAAGTTCTGTCAATGAAATGGATGTGACGGGATACTATGGGGCAGATTTACTTTCTGAACCTGAAAAACGTTTGTGCTGTGATATGAGGTTGCCGCCAGCCATTTATCTGAAGATGCAAGAGCAACTGTCTCTACAAATACTTGGTGGCACTGTCTCTGCTAAATCGGATGCTCATCAATTGTTCAAGATGGATACCATCAAAATTGACAGGGTCTTTGATATGCTCATCAAAAAGGGAATTGGTTCACCCTGA 1677 0.4329 MGRSRGNFHPADEDPNQRSRRKKNAASGENSESGAAGQGASEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWHADDEILLLEGIEMYGLGNWTEVAEHVGTKNKEACIEHYRNAYLKSPFFPLPDMSHVVGKNKNDLLAMGRGLGEDKKGISMADLSLKEDSPFSPSRVKVEDSHKVGSSGRLPSSSKSESESAPSGIKHAAAGANQKASNVSRGKGGPGVIKMEDSLADRDFGGKKPSSSGNEGSSLVEMSGYNPKRQEFDTEYDNDAEQLLADMEFKDTDTEEERELKLRVLRLYSKRLDERKRRKDFVLERNLLYPNPFEKDLTPEEKTICRKYDWFMRFHTKEEHEELLRTVISEHRTLKRIQELKEARAAGCRNSAEADRYLVHKRRRESEESARRAKGSAQVGPSNQGVPNALLSPDSAGKDLSARPTGPATSSSVNEMDVTGYYGADLLSEPEKRLCCDMRLPPAIYLKMQEQLSLQILGGTVSAKSDAHQLFKMDTIKIDRVFDMLIKKGIGSP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00028 558 SMART sant 104 153 IPR001005 -
Gabi4319g00028 558 FunFam Transcriptional adapter 2 473 557 - -
Gabi4319g00028 558 ProSiteProfiles SWIRM domain profile. 472 558 IPR007526 GO:0005515
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 1 39 - -
Gabi4319g00028 558 Gene3D - 102 153 - -
Gabi4319g00028 558 CDD SANT 108 149 IPR001005 -
Gabi4319g00028 558 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Gabi4319g00028 558 SMART zz_5 44 89 IPR000433 GO:0008270
Gabi4319g00028 558 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 422 479 - -
Gabi4319g00028 558 FunFam Transcriptional adapter 2 101 153 - -
Gabi4319g00028 558 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Gabi4319g00028 558 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Gabi4319g00028 558 CDD ZZ_ADA2 48 96 IPR041983 -
Gabi4319g00028 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 441 455 - -
Gabi4319g00028 558 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Gabi4319g00028 558 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Gabi4319g00028 558 SUPERFAMILY RING/U-box 48 111 - -
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4319g00028 558 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 553 - -
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 215 230 - -
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 422 437 - -
Gabi4319g00028 558 MobiDBLite consensus disorder prediction 194 287 - -
Gabi4319g00028 558 Gene3D - 473 556 IPR036388 -
Gabi4319g00028 558 PIRSF Txn_adaptor_ADA2 35 558 IPR016827 GO:0003713|GO:0006357|GO:0035065
Gabi4319g00028 558 Gene3D - 39 96 IPR043145 -
Gabi4319g00028 558 SUPERFAMILY Homeodomain-like 466 555 IPR009057 -
Gabi4319g00028 558 FunFam Transcriptional adapter 41 96 - -
Gabi4319g00028 558 Pfam Myb-like DNA-binding domain 108 149 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00028 Gabi-Chr4319 250023 256488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00028 1 556 EF-hand Containing Proteins AT3G07740 47.478 2.57e-166 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4319g00028 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00028 K11314 - gmx:100811887 944.88