Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00015 ATGGAAATGGACCCTGGCAAACTTTTCATTGGCGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAATATTTCCAGAATTTTGGAGATGTAGTAGAAGCTGTGATAATGAAGGATCGCAACACCGGGCGTGCCCGTGGTTTCGGATTCATTGTTTTTGCTGATCCTTCTGTTGCTGAGCAAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTCCCCAGAGATGATCTGAATGTTCTGAACAGAAGCAACAGTAGCACTCATGGGTCGCCTGGTCCTGCTCCTACACGCACTAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACGTATGATTCTGAGGAAGGAGTTGATAAAGTGCTATGCAATACCTTTCATGAATTGAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAGCAGAGGCCAGTTAGGTGGATATAGTTATGGTATAAGTAGAGTTAGTAGCTTTCCTAATGGTTGCATTCCAGGTTATAATCCAAGCCTGGTTGGAGGGCTTAGAATAGATGCTAGATTGAGTCCTGTTGCTGTTGGCCGTAGTGGATATCCTCTTTTGAGTCCTAGTTATGGTACAGGACTCAATTTTGAGCCACCATTGAGCCAAAATGAAAATGCAAACTTTCCATCTAACTTTGTCATAGAACGGGCATTGAACTATTCGTATAGTGGAAGTCCGAGCAGGTACAATAATGCCATGAGGTATGCTGGTACAAACGCTGGCAACAATTCAACCATAAGTTCAATAAGTCAGAATTTGTGGGGGAATAGGAATCTCAACTATGTTACTAACCCTACAAGCTCTGATGGTTTTGCTGGTTATGGAAGTGAAAATTCAAGTATGGGTTCTTTAGGTACTATTGGATCACTTTGGAGTTCCTCCCTTGGTATTGATCAAGCTGGAACTATTGGCTCTGGATATGGTAAGGGCAATCTTAATTATAGGTCTGGAGATGTGATTTTGGGGTCAAAAACCATAGGTTATGGAAAAAGCAATGACAGCATTATTGCATCAGCTTCATCATTCGCTTTATCAAATGGCAGTTATGATGAGGCATACAAAGATACTTATGAAGCTGGGTCATTTTATTGGGACCATGCTTGGAGATCATCAACTTCAGAACTGGAGGATTCTGGCTCTCTTAGTTTTGATCTTGAAAATGCTGTTTCAGATTTAATGAGCAAAAGCTCTGCTGGTCACATTGGGGCTTATACTGTTGCCACTAGACAATCAAATAGAGGAATTGCTGCCTAG 1431 0.4151 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRNTGRARGFGFIVFADPSVAEQVVMEKHVIDGRTVEAKKAVPRDDLNVLNRSNSSTHGSPGPAPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEGVDKVLCNTFHELNGKMVEVKRAVPKELSPGPSRGQLGGYSYGISRVSSFPNGCIPGYNPSLVGGLRIDARLSPVAVGRSGYPLLSPSYGTGLNFEPPLSQNENANFPSNFVIERALNYSYSGSPSRYNNAMRYAGTNAGNNSTISSISQNLWGNRNLNYVTNPTSSDGFAGYGSENSSMGSLGTIGSLWSSSLGIDQAGTIGSGYGKGNLNYRSGDVILGSKTIGYGKSNDSIIASASSFALSNGSYDEAYKDTYEAGSFYWDHAWRSSTSELEDSGSLSFDLENAVSDLMSKSSAGHIGAYTVATRQSNRGIAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00015 476 CDD RRM2_Hrp1p 109 186 - -
Gabi4319g00015 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gabi4319g00015 476 MobiDBLite consensus disorder prediction 87 102 - -
Gabi4319g00015 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gabi4319g00015 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Gabi4319g00015 476 MobiDBLite consensus disorder prediction 86 107 - -
Gabi4319g00015 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Gabi4319g00015 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 167 IPR000504 GO:0003723
Gabi4319g00015 476 SUPERFAMILY RNA-binding domain, RBD 100 205 IPR035979 GO:0003676
Gabi4319g00015 476 SMART rrm1_1 109 181 IPR000504 GO:0003723
Gabi4319g00015 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gabi4319g00015 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 471 - -
Gabi4319g00015 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Gabi4319g00015 476 SUPERFAMILY RNA-binding domain, RBD 4 98 IPR035979 GO:0003676
Gabi4319g00015 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 105 192 - -
Gabi4319g00015 476 Gene3D - 105 191 IPR012677 -
Gabi4319g00015 476 Gene3D - 5 87 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00015 Gabi-Chr4319 166074 170304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00015 8 187 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 9.14e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00015 K14411 - cave:132171089 643.654