Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4319g00013 ATGGTTTCGTTAGAGGATTCTCGTTCCAATTCGAACCGTTTCCCCTTATCGCGAAGCTATCAGTATTTTTCATCCAAAACGCAGCGACATACCGGAAGGTCCATGCGCACAATACGCTCCAATTTCTTCCAAGACGACAATAGCAGCTGCTCCTTCACCGTCACCGAGAAATCCATGTGTCTATCGGAAAACCTCACCGACTCCGTCGTCGACCTCCGTCTCGGCGAGCTCGCATCCAAGAACAACAAATCAGTCAAGCACACCGCCGCGGAGGAGAACCTCCTCGATCTTTCCCAGGCCTTCAGTGATTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGAGGCTGGCGTGCTTGCCGTCTCCGGAATATGTGCAGAAGAGCCACACCGGCGACGAAGTCGAGAAGGAACCGGAACCGGAGCCTTGCATGGGGTTCCTGCAGAGGGAAAATTTCTCCACGGAGATTATTGAGATTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGCATCGACGGGCTCCAGTCGCCGTCGGTCGCCGTTAAGCGATCTGCGGCGGCGAAGCTGAGGCTGTTGGCGAAGAACCGCGCCGATAACCGAGTTCTGATAGGTGAGTCCGGTGCTGTTCCTGTTTTGGTTCCTCTGCTTCGGTGCAGTGATCCGTGGACGCAGGAACACGCCGTGACGGCGCTGTTGAATCTCTCTCTGCATGAAGACAACAAGATGCTGATAACCAATGCTGGAGCGGTGAAGTCGCTGATTTATGTGCTGAAGACTGGGACGGAGACTTCGAAGCAGAACGCGGCGTGCGCGTTGTTGAGCCTTGCGTTGGTGGAAGAAAACAGGAGCTCGATCGGTGCTTCTGGGGCGATACCCCCTCTGGTTTCGCTTCTGTTGAACGGTTCCAACAGAGGGAAGAAGGACGCTCTGACGACTCTGTATAAGCTGTGTTCCGTGAAGCAGAACAAGGAGAGGGCGGTGAGCGCAGGGGCGGTGAAGCCTCTGGTGGAGCAGGTGGCGGAGCAAGGGACGGGTATGGCGGAGAAGGCAATGGTGGTGTTGAACAGCTTGGCGGCGATTCAGGAAGGGAAGGATGCGATAGTTGAAGAAGGTGGAATAGCTGCTCTCGTGGAAGCGATTGAAGATGGTTCGGTGAAGGGAAAGGAGTTTGCTGTTTTGACGCTTCTCCAGCTCTGTGCTGACAGTGTGAGGAACAGAGGATTTCTTGTGAGGGAGGGTGGGATACCTCCTCTGGTTGCTCTTTCCCAGACTGGTAGTGTTCGAGCTAAGCACAAGGCTGAAACGCTACTTCGATATTTGAGAGAATCAAGACAAGAAGCATCATCTTCAAGTTCTTAG 1371 0.5441 MVSLEDSRSNSNRFPLSRSYQYFSSKTQRHTGRSMRTIRSNFFQDDNSSCSFTVTEKSMCLSENLTDSVVDLRLGELASKNNKSVKHTAAEENLLDLSQAFSDFSACSSDISGELQRLACLPSPEYVQKSHTGDEVEKEPEPEPCMGFLQRENFSTEIIEIISPEDLQPTVKLCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENRSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGAVKPLVEQVAEQGTGMAEKAMVVLNSLAAIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASSSSS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4319g00013 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Gabi4319g00013 456 SMART arm_5 200 240 IPR000225 GO:0005515
Gabi4319g00013 456 SMART arm_5 241 281 IPR000225 GO:0005515
Gabi4319g00013 456 SMART arm_5 364 404 IPR000225 GO:0005515
Gabi4319g00013 456 SMART arm_5 282 322 IPR000225 GO:0005515
Gabi4319g00013 456 SMART arm_5 406 446 IPR000225 GO:0005515
Gabi4319g00013 456 Gene3D - 313 453 IPR011989 -
Gabi4319g00013 456 Gene3D - 151 312 IPR011989 -
Gabi4319g00013 456 Pfam Armadillo/beta-catenin-like repeat 284 322 IPR000225 GO:0005515
Gabi4319g00013 456 Pfam Armadillo/beta-catenin-like repeat 202 239 IPR000225 GO:0005515
Gabi4319g00013 456 SUPERFAMILY ARM repeat 164 445 IPR016024 -
Gabi4319g00013 456 PANTHER U BOX DOMAIN-CONTAINING 129 445 - -
Gabi4319g00013 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Gabi4319g00013 456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 335 IPR000225 GO:0005515
Gabi4319g00013 456 FunFam U-box domain-containing protein 4 157 309 - -
Gabi4319g00013 456 FunFam U-box domain-containing protein 4 310 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4319g00013 Gabi-Chr4319 154043 156864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4319g00013 166 449 U-box Gene Family AT2G23140 49.648 8.54e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4319g00013 - - gmx:100818658 737.643