LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4319g00003	ATGTCTATCATCGAAACCCCCACCGTCGATTGCGATCACGATCAGCGCGGCGGGGTCGCCCCCACAGACTACTACCGTCACTCCGCGAAGCGTAAATTCGACGACTTCACTTCGGCCTTCGACGATTACGATGATTGCGCCGATTTTCTCGACTTAGTCTCCGTCAGAATGAAGAAAGACGTTGAAGCCAACGCCGTCGTCAATTCATCCTCCGCCGCGGCGTCGCGGTTGCAGTTCTTTGTTCGCATGATATCGAAGGGTAACAGCATGGTGATGCAGGGTTTCCCACAAGACACCGTGAAATCGATTCACGAGCGCATCGAGACGATGACGGGGATTCCGGTGTGCGAGCAGCGGTTGATATATAATGGGAAGCAGCTTCGGTGGAAGCAGACTCTGCATGAATGTGGCATTCAGAACGATGCGAATCTCCAATTGGTTGGGAATTTGCGGAGTGGGATGATCCCCAAAGTAATGGAGGTGATCGACAATATGATTTCCCTAATTTGCCGTTTGTGCAGAGGCGAAGTGGTGCACGATGCTCTGGAGGTGATCAAGATTCTCATGACCAAGAACTTCAATGTTCCTGGTTATTTTGAAGCTTTCTTGTCTTCTAAATCTCCCGCAATACTTGTGATGCTCTATGTATCCCCCCATGCAGGTAACAAGGGCCGTGCTAATTGTTCCATCATGCATTTCTTGAGTTGGTGTCACACTAAGTTAAGTAAATCGTTTTATCGTCCGTGTGCTCGTGTGGTGTTGGAGTTATGTAAAGTGCTTCGACGGGTGGTGGGTTGTGATGATCCTTTGTATATCTCTTGCCGGAGTGCTTTTGGGTTTTTGTTGGAGAATGGTAGTGTTTCCTATGGTTCTGGGAATCCTAAAAGCTCGATTTTGCTTCAAGATATTTGCCCCTTTGTTCGTGAGCTTGCAAATACGTTGTTGAGGGATTTGGATTTGAGTATAAGTTGCCCCACCTCCACGGGGCCGTTCTCTACAGATGTTCGGGATTTCACGGCATTGTTAATCCCTTTAAGGACCGGAATCAGAGAGCAGCAAGCTTTGGAGGGTTCTGTGACTGATGGAAAATGCTGTCAGGAGGACCCTTTGCTTGCAGAAGAGGTTGATTACCTTCGTCTTATATATATTCAGTTATTGAGCAAAATGGATGAGTGCCTTCGTGGCATGGAGGAATGCTTGGCTAACAAGGAACAAGGGGAAGGAGATAATGTCTATTTGGGATGGTATCAGTATCTTTCCATCTTGAAGGAGTTGCATCAAATCTCAAAGCTCTATGACGGTGCCGAAGAAAAATTTTGGAGAGTTTTGATGCATAGAAGAAACATGCTGTCTCTACTAATTATTCGGCACGCAAAGAGAACTGATGATCATCAGTGGATTCTTGAGCACAAAAGCGTGACCAATTTTGAATCTAGGAGGCATTTGGCGATGTTGCTGTTCCCTGAGGTAAAAGAAGATTATGAAGAGTTTCATGAGATGCTTATTGACAGGTCTAAGTTATTAGCTGAATCTTTCGAGTACATAACTGGAGCAAAGCCTGAGTCCCTGCATGCTGGTCTATTTATGGAGTTCAAAAATGAGGAAGCTACAGGACCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTGTGTCAAGCAATATTTAATCCGCAAAATGCTCTTTTTGTGGCATGCCCCAATGACTGTAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCTCTGGTCGCATTATTGCACTAGCTTTGATGAATAGGGTGCACGTGGGTATTGTTTTTGATCGTGCGTTTTTCATGCAATTGGCTGGAAACTATATTACTTTAGAAGATATACGGGATGCAGATCCTTACTTGTATAGCAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCTGATGCATTAGGACTGACCTTTGTCAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAGCTTTGCCCTGGTGGGAAAAGACTTGTAGTGAATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTGATGATATTCTTTCCAACTCAAGGCTCCGGCAGTTCTTTCAAAGTTTAGATCTTGAAGATCTTGACTGGATGCTGCATGGGAGTGAAAATACCACTTCTGTTGAAGATTGGAAGGCACATACTGAGTATAATGGCTATAAAGAGACTGATGGTCACATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCGGAACAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCATGGTTTGGGTTCCCGTCTGTACATTTGCAGGTCCCTGGAACCTGAAGATCGTCTGCCGTCATCTCACACATGCTTTTACCAGCTGTGTTTACCCCCTTATTCATCTATGGCTGTCATGCAAGATCGCCTTGGAGTCATCACTCAAGATCACATTGGTTGCAGTTTTGGTACTTGGTGA	2577	0.4474	MSIIETPTVDCDHDQRGGVAPTDYYRHSAKRKFDDFTSAFDDYDDCADFLDLVSVRMKKDVEANAVVNSSSAAASRLQFFVRMISKGNSMVMQGFPQDTVKSIHERIETMTGIPVCEQRLIYNGKQLRWKQTLHECGIQNDANLQLVGNLRSGMIPKVMEVIDNMISLICRLCRGEVVHDALEVIKILMTKNFNVPGYFEAFLSSKSPAILVMLYVSPHAGNKGRANCSIMHFLSWCHTKLSKSFYRPCARVVLELCKVLRRVVGCDDPLYISCRSAFGFLLENGSVSYGSGNPKSSILLQDICPFVRELANTLLRDLDLSISCPTSTGPFSTDVRDFTALLIPLRTGIREQQALEGSVTDGKCCQEDPLLAEEVDYLRLIYIQLLSKMDECLRGMEECLANKEQGEGDNVYLGWYQYLSILKELHQISKLYDGAEEKFWRVLMHRRNMLSLLIIRHAKRTDDHQWILEHKSVTNFESRRHLAMLLFPEVKEDYEEFHEMLIDRSKLLAESFEYITGAKPESLHAGLFMEFKNEEATGPGVLREWFVLVCQAIFNPQNALFVACPNDCRRFFPNPASKVHPLHLEYFSFSGRIIALALMNRVHVGIVFDRAFFMQLAGNYITLEDIRDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKRLVVNSKNREKYVDLLIQNRFVTSISEQVSHFAKGFDDILSNSRLRQFFQSLDLEDLDWMLHGSENTTSVEDWKAHTEYNGYKETDGHISWFWEIVGRMSAEQRKVLLFFWTSVKYLPVEGFHGLGSRLYICRSLEPEDRLPSSHTCFYQLCLPPYSSMAVMQDRLGVITQDHIGCSFGTW	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4319g00003	858	ProSiteProfiles	HECT domain profile.	519	858	IPR000569	GO:0004842
	Gabi4319g00003	858	PRINTS	Ubiquitin signature	130	151	IPR019956	-
	Gabi4319g00003	858	PRINTS	Ubiquitin signature	109	129	IPR019956	-
	Gabi4319g00003	858	PRINTS	Ubiquitin signature	88	108	IPR019956	-
	Gabi4319g00003	858	Gene3D	-	71	165	-	-
	Gabi4319g00003	858	SUPERFAMILY	Hect, E3 ligase catalytic domain	493	843	IPR035983	GO:0004842
	Gabi4319g00003	858	Gene3D	Hect, E3 ligase catalytic domain	619	701	-	-
	Gabi4319g00003	858	ProSiteProfiles	Ubiquitin domain profile.	77	153	IPR000626	GO:0005515
	Gabi4319g00003	858	SMART	hect_3	517	856	IPR000569	GO:0004842
	Gabi4319g00003	858	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	619	701	-	-
	Gabi4319g00003	858	Pfam	Ubiquitin family	80	151	IPR000626	GO:0005515
	Gabi4319g00003	858	Gene3D	Hect, E3 ligase catalytic domain	742	856	-	-
	Gabi4319g00003	858	SUPERFAMILY	Ubiquitin-like	70	155	IPR029071	-
	Gabi4319g00003	858	CDD	HECTc	498	856	IPR000569	GO:0004842
	Gabi4319g00003	858	Pfam	HECT-domain (ubiquitin-transferase)	548	845	IPR000569	GO:0004842
	Gabi4319g00003	858	SMART	ubq_7	77	149	IPR000626	GO:0005515
	Gabi4319g00003	858	Gene3D	Hect, E3 ligase catalytic domains	498	732	-	-
	Gabi4319g00003	858	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	78	856	-	-
	Gabi4319g00003	858	FunFam	E3 ubiquitin-protein ligase UPL5	742	857	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4319g00003	Gabi-Chr4319	31019	37497	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4319g00003	77	173	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	36.000	2.94e-12	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4319g00003	-		-	gmx:100789233	1211.82