Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00069 ATGGGGACTCCAAGAGGAGTAGCTATTCTCTGTTTTGCATTTTTCTCGTTTTGGAGCTCTGCAAACGCTTTGCTTTCTCCTAAAGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGATTCTCTAGAGGATCCACATGGTGTTCTTGATAATTGGGATGGTGATGCCGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTTCTGAAAACCTGGTCATTGGCCTGGGCACTCCCAGTCAAAGTTTATCTGGTACTCTATCTCCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAACTGGTCCAATCCCTTCAGAGATAGGCAAACTTCCTAAGCTTCAAACTCTTGATCTCTCTAACAACTTCTTCAGTGGGGAAATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTTCAATACCTGAGGCTCAATAATAACAGCTTTGTTGATGAAATCCCAGAGTCACTGGCTAACATGACACAACTTGCTTTTCTTGATTTGTCCTTCAACAATATTAGTGGCCCGGTACCCAGAATTTTGGCCAAATCATTCAGCATTGTTGGAAACCCCCTTGTTTGTGCTACGGGAAAAGAACCAAACTGCCATGGGATGACACTGATGCCCATGTCCATGAACTTAAACAACACCGTAGGCAGACCAAAGACTCATAAAATGGCCATCGCCTTTGGCTTGAGTCTGGGATGCCTCTGCCTGATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGGCACAAGCATAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTGCTACTAACAACTTCAGCAGCAAAAACATACTTGGAAAAGGTGGTTTTGGACATGTCTACAAAGGAGTTCTCCCAGATGGCACTCTTGTAGCTGTAAAGAGACTTAAAGATGGAAATGCCATTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCCTGGCAGTGCACAGAAACCTCCTCAGACTCTATGGATTTTGTATAACACCATCAGAAAGGCTTTTAGTTTATCCATACATGTCTAATGGCAGTGTTGCTTCCCGTCTCAAGGGTAAGCCAGTCCTAGATTGGGGCACAAGGAAGCATATTGCTTTAGGAGCAGCAAGGGGACTACTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGGGATGTGAAAGCTGCCAACATATTACTTGATGACTATTGTGAAGCTGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGTACTGTGGGGCATATTGCCCCAGAATATCTATCCACAGGACAATCATCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTTCTTGAATTGATCACAGGTCAGAGGGCCCTAGAATTTGGAAAATCAGCTAACCAAAAAGGAGCCATACTTGATTGGGTAAAGAAAATTCATCAGGAGAAGAAGCTTGAATTGCTTGTAGACAAGGATCTAAAGAGCAACTATGACCGGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATACCTTCCAAGCCACAGACCAAAAATGTCTGAAGTAGTTCGCATGCTTGAAGGTGATGGACTAGCAGAGAGATGGGAAGCTTCTCAAAGAGTTGACACTACCAAGTGCAAACCCCATGAGTCCTGTTCATCAGATAGGTATTCTGATCTTACTGATGACTCTTTATTGTTAGTCCAAGCCATGGAACTCTCAGGACCAAGGTGA 1857 0.434 MGTPRGVAILCFAFFSFWSSANALLSPKGVNFEVQALMGIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNITGPIPSEIGKLPKLQTLDLSNNFFSGEIPPSLGHLRSLQYLRLNNNSFVDEIPESLANMTQLAFLDLSFNNISGPVPRILAKSFSIVGNPLVCATGKEPNCHGMTLMPMSMNLNNTVGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGHVYKGVLPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCITPSERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANQKGAILDWVKKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAERWEASQRVDTTKCKPHESCSSDRYSDLTDDSLLLVQAMELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00069 618 SUPERFAMILY Protein kinase-like (PK-like) 275 568 IPR011009 -
Gabi4316g00069 618 SUPERFAMILY L domain-like 33 195 - -
Gabi4316g00069 618 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Gabi4316g00069 618 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Gabi4316g00069 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 578 - -
Gabi4316g00069 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Gabi4316g00069 618 Pfam Leucine Rich repeats (2 copies) 97 137 IPR025875 -
Gabi4316g00069 618 Gene3D Transferase(Phosphotransferase) domain 1 375 587 - -
Gabi4316g00069 618 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Gabi4316g00069 618 FunFam Somatic embryogenesis receptor-like kinase 1 375 587 - -
Gabi4316g00069 618 ProSiteProfiles Protein kinase domain profile. 298 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4316g00069 618 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Gabi4316g00069 618 Pfam Protein kinase domain 299 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4316g00069 618 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Gabi4316g00069 618 SMART serkin_6 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4316g00069 618 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00069 Gabi-Chr4316 773032 776673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00069 12 618 Receptor kinase-like Gene Family AT5G16000 79.133 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi4316g00069 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00069 - - gmx:100798412 1160.21