Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00068 ATGTTGGAAGAAGACGCCACCACTGCCACAGCCACAGCCACGTGGGCGCGCATCTGCGACACGTGCCGATCCGCCGCATGCACGGTGTTTTGCCGCGCCGACTCTGCGTACCTCTGCGCCGGCTGCGACGCGCGCATCCACGCGGCGAACCGCGTGGCGTCGCGTCACGAGCGCGTGTGGGTGTGTGAGGCTTGCGAGCGTGCTCCGGCGGCGTTTCTGTGTAAGGCTGATGCGGCTTCTCTGTGTTCTTCGTGTGATGCTGACATCCACTCCGCCAACCCTCTCGCCGGCCGCCACCACCGTGTTCCGATCCTTCCGATCTCTGGTCCTCCGGCGACCCTTTTGGGTGATGGTGAAGATGAAGGGTTTGTTGGTGAAATGGAGGAAGAGGATGAGGATGATGAGAATGAAGCAGCTTCTTGGTTGTTGTTGAATCCTGTGAAGAACAGCAACAACAATAATAACAACAACAACAACAACAATAATCAGCAGAGTAATATTGGGTTTTTGTTTAGTGGGGAAGTTGATGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGTGACAACCACTTTGCTACTACTACTGCAACTACTGCTACTGATCATTATAATCAGCAGCAACATTATGGTGTTGGTGTTCCTCAGAAGAGCTATGGTGGTGATAGTGTGGTTCCTGTTCAGCAGGCACAGCATTTTCAGCTTGGGTTGGACTTTGAGCCCTCCAAAGCTGGGTTCAGTTACACTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATCAGGGATGTCTCAATTGCCCATTCAAGACCCCCCAAAGGAACAATTGACCTTTTTTCTGGACCTCCCATTCAGATGCCTTCTCATCTTACTCCAATGGACAGAGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGGAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGTATAAAAGGTCGATTTGCCAAGAGAACTGATGTAGATGCTGAAGTGGATCAGATGTTCTCCACAACACTAATCACAGAAGTTGGATATGGCATTGTTCCTTCTTTCTGA 1125 0.496 MLEEDATTATATATWARICDTCRSAACTVFCRADSAYLCAGCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLAGRHHRVPILPISGPPATLLGDGEDEGFVGEMEEEDEDDENEAASWLLLNPVKNSNNNNNNNNNNNNQQSNIGFLFSGEVDEYLDLVDCNSCGDNHFATTTATTATDHYNQQQHYGVGVPQKSYGGDSVVPVQQAQHFQLGLDFEPSKAGFSYTGSISQSVSVSSMDVGVVPESTIRDVSIAHSRPPKGTIDLFSGPPIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDAEVDQMFSTTLITEVGYGIVPSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00068 374 MobiDBLite consensus disorder prediction 146 165 - -
Gabi4316g00068 374 Pfam CCT motif 305 347 IPR010402 GO:0005515
Gabi4316g00068 374 SMART bboxneu5 14 61 IPR000315 GO:0008270
Gabi4316g00068 374 SMART bboxneu5 62 104 IPR000315 GO:0008270
Gabi4316g00068 374 CDD Bbox1_BBX-like 61 104 - -
Gabi4316g00068 374 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Gabi4316g00068 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 361 IPR045281 GO:0009909
Gabi4316g00068 374 Pfam B-box zinc finger 59 104 IPR000315 GO:0008270
Gabi4316g00068 374 CDD Bbox1_BBX-like 18 61 - -
Gabi4316g00068 374 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270
Gabi4316g00068 374 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00068 Gabi-Chr4316 751542 754365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00068 1 374 C2C2-CO-like Transcription Factor Family AT3G02380 56.848 1.37e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi4316g00068 zf-B_box 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00068 K12135 - qsu:112016332 492.271