Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00037 ATGGCTAGGTCTGCAAAAGGGCATCAAGAAGAATTGGGGGACGACGACGACGACGAAGAGCTCTTAACTGGAAACAGCTCTTCCTCACTCAACAAAGTGAAGGTGGATGAACCTAGCAGGGGGAAGAGGGGGAACCCACATCGTTCAAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGATTTCAGATTCTGAGAGATATCATACCTCAAAATGATCAAAAAAGAGATAAGGCCTCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTGCAAGAAAAATTACAAATTTATGAACAGTCTTATGAAGGGTGGAATCAGGAGCCAACGAAATTGATTCCATGGAGGAATCATCATGGGCTTGCTGAAAATAACACAGATCCTTCTCAAGCTATACAAAATGGGTCTGTTCATGAGAAAAATAATGATGTCTCTCCATCATTAATAAAAAATGTACAGAACCCATTAGAGTCTGACTTCTCCACAACAACTATTCAGAAGGGCACCATACCTGGTTCAGCTACAGAAGCAGTTCCCCTGACCATGCAAATGCGATTGGACATGTTTGACCCAGTAGTTAGCAGTGGTATGGTAACCCAACATCTGCAGGAACCTGTATCTAATGCTGACATGCCGTCCCATACCCAGCCTCAAATGTGGTTTAGTAAACCAGATAAGGTAAACTATACTGTTCCAGATAATACATTGAAGGAACAGGAGGAGCTGACAATTGAAAGTGGATCAGAGAGCATCTCAAGTGCCTATTCTCAGGGAATATTAGATACTCTGACGCAAGCGCTGCAATCTTCCGGTGTGGATTTGTCCCGGACTAGTGTCTCGGTGCAAATTGATGTTGGTAGACGAGCAAATACTGGGTTGACCCCCTCAAAGGGTCATGAAAACCAATTTGTGAGCAATAAAGCAATTCCATGTTCAGGAGTTGATTACTGCAGTGAGGATTCTGAGCAAAGTCTGAAGAGGCTTAGAAGAGAAGCGAGCTAG 1017 0.4326 MARSAKGHQEELGDDDDDEELLTGNSSSSLNKVKVDEPSRGKRGNPHRSKHSETEQRRRSKINERFQILRDIIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWNQEPTKLIPWRNHHGLAENNTDPSQAIQNGSVHEKNNDVSPSLIKNVQNPLESDFSTTTIQKGTIPGSATEAVPLTMQMRLDMFDPVVSSGMVTQHLQEPVSNADMPSHTQPQMWFSKPDKVNYTVPDNTLKEQEELTIESGSESISSAYSQGILDTLTQALQSSGVDLSRTSVSVQIDVGRRANTGLTPSKGHENQFVSNKAIPCSGVDYCSEDSEQSLKRLRREAS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00037 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 124 IPR036638 GO:0046983
Gabi4316g00037 338 Coils Coil 93 113 - -
Gabi4316g00037 338 MobiDBLite consensus disorder prediction 35 61 - -
Gabi4316g00037 338 CDD bHLH_AtBIM_like 48 121 - -
Gabi4316g00037 338 Gene3D - 45 117 IPR036638 GO:0046983
Gabi4316g00037 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Gabi4316g00037 338 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 335 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gabi4316g00037 338 MobiDBLite consensus disorder prediction 1 61 - -
Gabi4316g00037 338 SMART finulus 52 102 IPR011598 GO:0046983
Gabi4316g00037 338 FunFam BHLH domain class transcription factor 44 116 - -
Gabi4316g00037 338 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00037 Gabi-Chr4316 309142 312616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00037 3 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.234 2.53e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4316g00037 HLH 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00037 - - gmx:100791730 519.62