Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00022 ATGGGTTCTGTTTGTGGTTGTTTGAGTGTTGATGAATTTGAAGATTATGTGAATCCAAATGTTCCTGTATATAGGAACTGTGTGTGTCTCAGTTGCTTCGTACAGAGCTTTTTGAATGTGTACGCATCACTATTCCGTAGAGGGGAAGTGCATTCCATTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCTACAGCTTCACTTGATGATTCGCTATCTGACATGTACCGTTCTCCTCCAAGACCCTTGCCTTATGATGCAGACCCAAGGTGCTTCCGCTCACAGCGTGATGGACTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAACAGGTGATGTAGATGCGGACCCAGAATCTTTAAATTCAGGCAACAAATGGAATGAATGTACTGGTGAAGTTGGTTCAAAGGAATACCATTCTAAGTCCTCAGTAAGACTTTCGTCAGCAAAACTTACTACTGGAGTTGGGCTCGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCAAGGATAGTGACAAAGTGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGATACCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTGA 684 0.4298 MGSVCGCLSVDEFEDYVNPNVPVYRNCVCLSCFVQSFLNVYASLFRRGEVHSIPSSIQGAASMTSTASLDDSLSDMYRSPPRPLPYDADPRCFRSQRDGLVSRREKGSSHLNEESEPLTGDVDADPESLNSGNKWNECTGEVGSKEYHSKSSVRLSSAKLTTGVGLVYASSEEEDVCPTCLEEYTEENPRIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00022 227 CDD RING-H2_AIRP1-like 173 221 - -
Gabi4316g00022 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 224 IPR013083 -
Gabi4316g00022 227 MobiDBLite consensus disorder prediction 91 112 - -
Gabi4316g00022 227 MobiDBLite consensus disorder prediction 71 135 - -
Gabi4316g00022 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Gabi4316g00022 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Gabi4316g00022 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 225 - -
Gabi4316g00022 227 SMART ring_2 177 217 IPR001841 -
Gabi4316g00022 227 SUPERFAMILY RING/U-box 172 224 - -
Gabi4316g00022 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00022 Gabi-Chr4316 184986 190296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00022 1 225 C3H Transcription Factor Family AT5G38895 58.407 1.85e-94 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00022 - - gmx:100788192 403.675