Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00017 ATGGGAAGAGGTAGGGTTCAACTGAAGCGAATCGAGAACAAAACCAGCCAGCAAGTAACATTTTCCAAGCGGCGAACGGGACTTCTCAAGAAAGCACATGAAATCTCTGTGCTCTGTGATGCTCAAGTAGCCTTGATTATGTTCTCTACCAAAGGCAAACTTTTTGAGTATTCATCTGAAACCAGCATGGAAGACATACTGGAACGATACGAGAGACAAACTCATACAGAACTCTCTGGAGCTAACAATGAATCACAGGGAAATTGGTCTTTCGAGTACATCAAGCTCACCGCCAAAGTTGAAGTCTTAGAGAGAAACTTAAGGAACTTCGTGGGACATGATTTGGATCCCATGAGTATGAGAGAGCTTCAGAGTTTGGAGCAACAGCTTGACACATCTCTAAAGAGCAAGACTGCATGGCTTGCAAGGGCATTGGAGGAGCAAAACAGAAAGCTAGCAAAGATGAAGGAGAAAGAGAAGACTTTTACTGAGCATCCACACAACTGCCCAGAAAACCTGGGCCAAAATCCATCCACTGTCAACCTATGTTCTCCAGAGCTATTACCATCACAAACACTACTTCCTTCTCTAACTCTCAGTGGGAATTTGCAAGGACGAGCATGGCTGGAAGAAAAGGCTGAAGCTCAAACCGCCCCTACTCGCAATACTCTCATGCCACCATGGATGATGCATCACCTAACTAGTTAG 708 0.4492 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSETSMEDILERYERQTHTELSGANNESQGNWSFEYIKLTAKVEVLERNLRNFVGHDLDPMSMRELQSLEQQLDTSLKSKTAWLARALEEQNRKLAKMKEKEKTFTEHPHNCPENLGQNPSTVNLCSPELLPSQTLLPSLTLSGNLQGRAWLEEKAEAQTAPTRNTLMPPWMMHHLTS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00017 235 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4316g00017 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4316g00017 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4316g00017 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4316g00017 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4316g00017 235 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Gabi4316g00017 235 Coils Coil 141 165 - -
Gabi4316g00017 235 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gabi4316g00017 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi4316g00017 235 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Gabi4316g00017 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Gabi4316g00017 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4316g00017 235 Pfam K-box region 84 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4316g00017 235 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00017 Gabi-Chr4316 153969 170895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00017 1 224 MADS-box Gene Family AT1G26310 46.774 8.66e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4316g00017 K-box 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00017 K09264 - gmx:100786580 310.457