Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00016 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACATTTGCAAAGAGGAGAAATGGGGTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTTTGTAGCAGCTCTAGCATGCTCAAAACTCTTGAAAGGTACCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAACCTGGCAAAGAACTTGAGAACAGTTACCGTGAATACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAACTTGAACGGCAATTGGATTCATCTCTGAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTATCTGATCTTCAAAATAAGGAGCAAATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAATTCAAGAAATAACTATAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATGCTCACTCTCAGAGCTTCTTCCAACCATTGGAATGCAATCCCACATTGCAGATTGGGTACAATACTGTAGCACCAGATCAGATAACTGCCACAACTCAATCTCAACAAGTGACTGGGTTTATTCCTGGATGGATGCTTTGA 735 0.4272 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPGKELENSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQMLVEANRSLTMKLEEINSRNNYRQSWEAGDQSMQYGGPQNAHSQSFFQPLECNPTLQIGYNTVAPDQITATTQSQQVTGFIPGWML 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00016 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gabi4316g00016 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4316g00016 244 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gabi4316g00016 244 Coils Coil 124 144 - -
Gabi4316g00016 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Gabi4316g00016 244 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4316g00016 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi4316g00016 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4316g00016 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4316g00016 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4316g00016 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4316g00016 244 FunFam MADS-box transcription factor 1 13 88 - -
Gabi4316g00016 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4316g00016 244 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gabi4316g00016 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00016 Gabi-Chr4316 133688 139082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00016 1 244 MADS-box Gene Family AT5G15800 73.004 5.77e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4316g00016 K-box 7.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00016 K09264 - gmx:100786066 435.647