Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00014 ATGAAGGGTTCTCTAACAGCAGAGAAAGGGTGGACGAAAGGCCCTTGGACTCATGAAGAGGACAAGTTGCTCCGTGAACATGTAAGCTTACATGGGGAGAGTAGATGGAATTCAGTGTCCAAGTTTACAGGCTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTAAATTATTTGAGGCCAGGCCTCAAGAAAGGCCAATTAACACCACTGGAAGAAGGAATCATTATGGAATTGCATGCTGTTCTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGAAGAACTGATAATGAGATTAAGAACTACTGGAGAACCCACTTCGGGAAGAGAGAAAAACCCAAACACAATAAGAATCAAGAAAAACGAAAAGCAAAGGTGCAAAAACAGTTGAAACAAGAGCAACAACCTCAGCCTCAGGAGTATGATATGATCAAAAGCTCCTTGTATCAAGAGGAGATAAAAAATGAAACAAAACCCTCTGAGATGCAAGACAACAAGCAACAAGAGATCATGGGTTTCATGTACCCAACAATTGAGCACCAATATAGCCTCTCTTTAATGCATCGTGAATTTTCTTCCTCATTTCTAGACACTACTACAGCAGATGATGGCTTATGGTTTAGTTTATGGGATTTTGATGAACCACAGTTCAGCAAATGTGTCATGCCAAATCAAGCTAACTTTGGAGCTGGAGGGGATTTGATGCAAAACCAAGATAAAACTTCGTGTTTCGATGTTGCTTATGATAACCTCAGCTACGGAAAATACATGTTTGATTGA 792 0.4066 MKGSLTAEKGWTKGPWTHEEDKLLREHVSLHGESRWNSVSKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEGIIMELHAVLGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKPKHNKNQEKRKAKVQKQLKQEQQPQPQEYDMIKSSLYQEEIKNETKPSEMQDNKQQEIMGFMYPTIEHQYSLSLMHREFSSSFLDTTTADDGLWFSLWDFDEPQFSKCVMPNQANFGAGGDLMQNQDKTSCFDVAYDNLSYGKYMFD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00014 263 CDD SANT 70 111 IPR001005 -
Gabi4316g00014 263 Gene3D - 12 65 - -
Gabi4316g00014 263 MobiDBLite consensus disorder prediction 111 126 - -
Gabi4316g00014 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 64 IPR017930 -
Gabi4316g00014 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gabi4316g00014 263 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 12 163 - -
Gabi4316g00014 263 SMART sant 65 113 IPR001005 -
Gabi4316g00014 263 SMART sant 12 62 IPR001005 -
Gabi4316g00014 263 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gabi4316g00014 263 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gabi4316g00014 263 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Gabi4316g00014 263 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gabi4316g00014 263 CDD SANT 15 60 IPR001005 -
Gabi4316g00014 263 Gene3D - 68 144 - -
Gabi4316g00014 263 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gabi4316g00014 263 MobiDBLite consensus disorder prediction 110 147 - -
Gabi4316g00014 263 FunFam Myb transcription factor 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00014 Gabi-Chr4316 120126 121336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00014 10 262 MYB Transcription Factor Family AT3G30210 45.283 1.22e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4316g00014 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00014 K09422 - gmx:100816944 355.14