Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4316g00002 ATGCTGTTGGGTCATCAAGCCATGAATTCTCTCTTCTTTCTTTGGTGTGTCTGTCTTAAATTTGGAATAATGCTTCTCAAATGTTTGGGTTTCATCCATTCAAAAGATACAAATGCATCTGAGGGACAGTATCCAACAGTAATAGAAGAACTAAGCCATCATTTTTCCCTGGCTGATCTTAGGAAATCAACCAATAACTTTGATGAAAACCAAATAATTGGACGTGGAGGCTTTGGTAAGGTATATAAAGGTTGTCTCCAACATAATGGTGTTGGTGATTATACAGTCGCATTAAAGCGATGGGACATGAATACCCTCGCAGAAAATCAAGAGTACTTCAAGAAGGAAGTAGAGTTGCTCTGCCAGCTTCGTCACCCTAATATGGTGTCTCTTATAGGATTCTGCAACGACAAACATGAGAAGATTATTGTGTACGAGTACATGCTCAATGGATCTTTCCACGATCATCTACGCAATAAGGACATGGAACCACTCTCATGGAAGAAAAGGCTTGAGATATGCATAGGAGCAGCATGTGGGGTGCACTACCTTCACACAGGAGCCAAGCGCACTATAATTCACCGTTTCATAAATCCTAGTAACATTCTTTTGGATAGCAATATGGTTCCCAAACTCAAATATTTTGGGCTTTCCTTACAGGGACCGCTTTTTCCATCAAAGCCAAAACTTATTAAAACTGAAGAAGTTGCAGGTACAATTGGTTTCTTAGCTCCTGAGAATTTCAACAAACCTATGCCCGGCTTAACAGATAGAAGTGATGTTTATTCCTTTGGTGTGTTTCTGTTAGAAGTGGTATGCAGAGAGTCATATACAACAATTTTAGGGGAGATATTGAGAGAACTCCCAAGTGAAGAATTAGACATGCCTATAATTTCAGATGGTGCATCTGTTCCTAACATAATGCAAAGGCTCACAGTTGAGGAGAATATTGATCCCACTCTTGCAGGAAAAATAGCACCAGAGTGTTGGAAAGTATTCATAGATATCATAGACAGATGCTTGAAGTATGAACCAAATGAAAGACCAGCTATGGGCGAAGTTGAGGTGGAACTTGAGCATGCTCTGTCATTGCAACAGGAAGCTGATGCCAACAACACTAGTGGCGAGTATAGCTTCTTATCGACCAGCATTTCTCAACCTCAACAATTACAAGAGGAGGCGCCAATTTCAGCATAG 1197 0.4043 MLLGHQAMNSLFFLWCVCLKFGIMLLKCLGFIHSKDTNASEGQYPTVIEELSHHFSLADLRKSTNNFDENQIIGRGGFGKVYKGCLQHNGVGDYTVALKRWDMNTLAENQEYFKKEVELLCQLRHPNMVSLIGFCNDKHEKIIVYEYMLNGSFHDHLRNKDMEPLSWKKRLEICIGAACGVHYLHTGAKRTIIHRFINPSNILLDSNMVPKLKYFGLSLQGPLFPSKPKLIKTEEVAGTIGFLAPENFNKPMPGLTDRSDVYSFGVFLLEVVCRESYTTILGEILRELPSEELDMPIISDGASVPNIMQRLTVEENIDPTLAGKIAPECWKVFIDIIDRCLKYEPNERPAMGEVEVELEHALSLQQEADANNTSGEYSFLSTSISQPQQLQEEAPISA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4316g00002 398 Gene3D Phosphorylase Kinase; domain 1 29 147 - -
Gabi4316g00002 398 ProSitePatterns Protein kinases ATP-binding region signature. 73 99 IPR017441 GO:0005524
Gabi4316g00002 398 FunFam Receptor-like protein kinase ANXUR2 32 147 - -
Gabi4316g00002 398 Pfam Protein tyrosine and serine/threonine kinase 70 356 IPR001245 GO:0004672|GO:0006468
Gabi4316g00002 398 ProSiteProfiles Protein kinase domain profile. 67 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4316g00002 398 PANTHER OS07G0166700 PROTEIN 53 365 IPR045272 GO:0004714|GO:0006468
Gabi4316g00002 398 SUPERFAMILY Protein kinase-like (PK-like) 43 360 IPR011009 -
Gabi4316g00002 398 MobiDBLite consensus disorder prediction 375 398 - -
Gabi4316g00002 398 Gene3D Transferase(Phosphotransferase) domain 1 148 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4316g00002 Gabi-Chr4316 13410 21530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4316g00002 22 371 Receptor kinase-like Gene Family AT3G51550 40.678 7.16e-74 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi4316g00002 PK_Tyr_Ser-Thr 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4316g00002 - - adu:107486597 406.371