Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00087 ATGGGAATTTGCTTTGGTTCTCCACTGCACAACGAAAATCCAACCCAAACCCCAACCACAACCGGTAGCCTTAGTACAACAGCTACACATGCTACATCCCAGACTACTAGCAGCAGCTATGCTACTACTTCTGGAAGTGTGAACAGCTCCACAAATAGCAAGTTCTCGGTGTCAAGTGGTGATGAACCTTTTCCGCATGGCCAGATCTTACCCACCTCAAATTTGAGGATCTTCACTTTTGCGGAGTTAAAAGTTGCAACTAGGAATTTCAGACCTGATACTGTACTTGGGGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGATAACTTCAAAGAATGGAAGTGGAACAGTCATTGCTGTAAAAAAGTTGAACTCAGAAAGCTTACAAGGAATTGAGGAGTGGAAGTCAGAAGTAAATTTTCTTGGACGCCTTTCTCATCCTAACCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAAACAGAGCTTCTTCTTGTCTATGAATTCATGCAAAAGGGAAGTTTGGAAAATCATCTATTTGGAAGAGGCTCAGCTGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATTCTAATTGGAGCAGCTCGTGGCCTTGCATTTTTGCATGCATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTTGATGGGTCCTATAATGCAAAGATATCAGACTTTGGCTTGGCCAAACTGGGTCCTTCCGCTAGTCAATCTCATGTGACAACAAGGGTGATGGGCACATTTGGTTATGCAGCCCCTGAATATATGGCCACAGGGCATTTATATGTAAAGAGTGACGTATATGCTTATGGAGTTGTTTTGGTTGAGATGCTAACAGCACTACGAGCAATTGACACAAACCGTCCAAGTGGGCAACATAATCTAACGGAATGGGTCAAACCATACTTACATGATAGAAGAAAATTGAAGAGCATTATGGATTCTCGCTTTGAAGGAAACTATCCATCCAAAGCTGCATTTCGTATAGCTCAGCTTGCTTTAAGATGTCTTGAAGCTGAGCCCAAACATCGACCAGCAATGAAGGAAGTTTTGGAGAACTTGGAGCGATTTCAAGCTGCCAATGAGAAACCTAAGGAACCTAAATTCCGTTCTGCTCATGCCCTTGCTACCCGTCAAGGTCACCAAGCTGTGCACCATCGTTCTCCACTGAATGAATAA 1224 0.433 MGICFGSPLHNENPTQTPTTTGSLSTTATHATSQTTSSSYATTSGSVNSSTNSKFSVSSGDEPFPHGQILPTSNLRIFTFAELKVATRNFRPDTVLGEGGFGKVFKGWLEEKITSKNGSGTVIAVKKLNSESLQGIEEWKSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKILIGAARGLAFLHASEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTFGYAAPEYMATGHLYVKSDVYAYGVVLVEMLTALRAIDTNRPSGQHNLTEWVKPYLHDRRKLKSIMDSRFEGNYPSKAAFRIAQLALRCLEAEPKHRPAMKEVLENLERFQAANEKPKEPKFRSAHALATRQGHQAVHHRSPLNE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00087 407 MobiDBLite consensus disorder prediction 374 407 - -
Gabi4302g00087 407 FunFam Serine/threonine-protein kinase PBS1 174 387 - -
Gabi4302g00087 407 Pfam Protein tyrosine and serine/threonine kinase 94 369 IPR001245 GO:0004672|GO:0006468
Gabi4302g00087 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Gabi4302g00087 407 Gene3D Transferase(Phosphotransferase) domain 1 174 395 - -
Gabi4302g00087 407 MobiDBLite consensus disorder prediction 1 62 - -
Gabi4302g00087 407 ProSiteProfiles Protein kinase domain profile. 90 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4302g00087 407 ProSitePatterns Protein kinases ATP-binding region signature. 96 127 IPR017441 GO:0005524
Gabi4302g00087 407 FunFam Serine/threonine-protein kinase BIK1 57 173 - -
Gabi4302g00087 407 SUPERFAMILY Protein kinase-like (PK-like) 64 369 IPR011009 -
Gabi4302g00087 407 MobiDBLite consensus disorder prediction 9 59 - -
Gabi4302g00087 407 Gene3D Phosphorylase Kinase; domain 1 74 173 - -
Gabi4302g00087 407 PANTHER OS01G0588500 PROTEIN-RELATED 39 373 - -
Gabi4302g00087 407 CDD STKc_IRAK 96 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00087 Gabi-Chr4302 809198 812086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00087 76 377 Receptor kinase-like Gene Family AT4G02010 49.346 3.53e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4302g00087 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00087 - - gmx:100305417 647.121