Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00085 ATGGAATATGGTGCCTTAGTGCACAATTCTGCATTTGGGAACTTGTCAGACTCTGCCACAGTTACAGAAGGAGAATTCATTGATGAGCTTTTGGTTGAAGGTTGCTGGTTGGAAACAAGTGCTGGTGGATCCTACAACTTCATGCAACAACCATGTGGTAGTGTTGTTGTGACGGAGGCTTCACAACAACACTACTTGGGAGCTTCAGAACAGTCCAATCAGCAGCAGCAGCAGCAAATGTTCCAACAAGAATCAGAGGAAAGTTTTGTTGTAGGGAAGAGATGGTGGATTGGACCAAGTGCGAATCCTGAGCCATCTTCTTCTGTGAAAGAGAGATTAGTGGTTGCTGTAGGGTACTTGAAAGAATACACAAAGAACGCTAATGTGTTGATTCAGATATGGGTGCCCTTAAGGAGAGGACTTGATCAGTATCATAGAAATGTTTCCAATCCAGATGAGGGTGTTTCAGTTGGTTTTCCTATGAGTCCTAATGCTAACCCAAACCCCAATGTTTACGTTCGCTTCTTTAGAAGCAACGTGTACCCGCGTGTTCATGATGGTCGTGGATCTTTGGCTCTTCCTGTATTCGAAAGAGGTAGTGGAACTTGCCTTGGTGTCTTCGAGTTTGTAATGACCAACCAAAGCATCATCAACTACCGCCCACAACTTGAGAATGTCTGCAATGCTCTCGAGGCTGTTGATTTTAGGAGTTGTCAAAACTTCATTCCACCTGCTGTAAAGGTATTTGACGAGTTGTACCAAGCAGCACTGAATGAGATAGTGGAGGTGTTAACATCTGTGTGCAAAACACACAATTTGCCTTTAGCTCTGACTTGGGCTCCTTGTATACAACAAGGAAAGTGTGGCTGTGGTCATTCAACTGAGAATTATGTGTGTTGTGTGTCCACTGTGGATTCAGCATGTTTTGTTGGGGATCTTGACATATTGGGATTCCAAGAAGCATGCTCTGAGTATCACCTTTTCCGAGGTCAAGGAATAGTTGGAACAGCTTTCACAACCACCAAACCTTGTTTTGCTATTGACATAACTGCGTTTAGCAAAGCTGAATATCCTCTTTCTCACCATGCAAAGATGTTTGGGTTGCATGCTGCTGTGGCTATTCCTCTTAGGAGTGTCTACACTGGATCAGCTGATTTTGTGTTGGAGTTTTTCCTACCAAAGGATTGTCATGACACTGAAGAACAGAAGCATATGCTCAACTCATTATCCATGTTGGTTCAACAAGCTTGCCGTAGCTTGCATGTTGTCATGGAAGATGAATTCACGTTACCACAAGCACCACCACCACCACCACACAATAATAAAGAAGAAATTAATACTCATCGTGCTTCACAATCACAAGTTGAACCATGTTCAAAAGAATCATCATGGATTGCACATATGATGGAGGCACAAGAACAACAGAAGGGGAAAGGTGTGTCTGTGTCATTGGAATATTTGGAAGAGCCAAAAGAGGAATTTAAAGTAACAACAAACTGGGATAGCACTGATCAGGATCAGGATCAGGAGCATGTGCAAGCGCAGGTGTTTTCAGATTTTGGACAATTTGAGCAAAGTTCAGTGTCCAGATACAGAACAAGTGTAGAGGGTGGGGAAGAATCTTATACATTCGGTGGACGCCGTTCATCTTCTGGTGGCAGAAAGTCAGGTGAGAAGAGAAGAACCAAAGCAGAGAAGACTATTAGTTTACCAGTTCTTAGACAATACTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAGCATTGGTGTATGTCCCACAACTCTCAAAAGGATATGCAGACAACATGGGATAACTAGGTGGCCTTCAAGGAAAATCAAGAAAGTAGGCCACTCTTTGAAGAAACTTCAACTTGTGATTGATTCAGTCCAGGGTGCTGAGGGTGCCATTCAAATTGGTTCCTTTTATACCAGTTTTCCAGAGTTGAGTTCTGCTGATGCTTCTACCTTTAGGCATACTGATTCATCTAAGAAAATGCATACTTATACTGATAATGTCTTGTATGGGCATGGAGATGGAGTTACTAGTTTAAAATCCCCACCCTCTTCTTGCAGTCAGAATTTTGGTCCAACCATAAACCAACCTTCCACTCTAATCAACACTGTATCTGTATCTAATAATGGGGATGTTCTAATGACAGAAAGCACTGTTCCTGATGCATTGCTAAGGAGAACTCATAGTGAAGCTGAGTTGCATGTATCAATACAAGAGGATACAAAACACTTCACAATACCCAAGAGCCAAACTCTACCTCCCTTGTCTGAAAGTAGTGGCTGGAACTCTCGAGAAAGGGGTGCTTTTAGAGTCAAAGCTACTTTTGCTGATGAAAAAATCCGTTTTAGCTTGCAACCCATTTGGGGCTTCAGAGATTTGCAGCTTGAGATCGCAAGACGTTTCAATCTTAACGATGTAAGCAACATAGTCCTCAAGTATTTGGATGATGAAGGGGAGTGGGTTGTTTTAGCATGTGATGCTGATCTTGAGGAGTGTAAAGACTTACATAGATCATCACAGAGCCGCACAATTAGACTCTCCTTATTTCAAGCTTCACCTTTGAATCTAGCAAATACTTTTGGTAATAATAGCCCATCCTAA 2613 0.4233 MEYGALVHNSAFGNLSDSATVTEGEFIDELLVEGCWLETSAGGSYNFMQQPCGSVVVTEASQQHYLGASEQSNQQQQQQMFQQESEESFVVGKRWWIGPSANPEPSSSVKERLVVAVGYLKEYTKNANVLIQIWVPLRRGLDQYHRNVSNPDEGVSVGFPMSPNANPNPNVYVRFFRSNVYPRVHDGRGSLALPVFERGSGTCLGVFEFVMTNQSIINYRPQLENVCNALEAVDFRSCQNFIPPAVKVFDELYQAALNEIVEVLTSVCKTHNLPLALTWAPCIQQGKCGCGHSTENYVCCVSTVDSACFVGDLDILGFQEACSEYHLFRGQGIVGTAFTTTKPCFAIDITAFSKAEYPLSHHAKMFGLHAAVAIPLRSVYTGSADFVLEFFLPKDCHDTEEQKHMLNSLSMLVQQACRSLHVVMEDEFTLPQAPPPPPHNNKEEINTHRASQSQVEPCSKESSWIAHMMEAQEQQKGKGVSVSLEYLEEPKEEFKVTTNWDSTDQDQDQEHVQAQVFSDFGQFEQSSVSRYRTSVEGGEESYTFGGRRSSSGGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYTSFPELSSADASTFRHTDSSKKMHTYTDNVLYGHGDGVTSLKSPPSSCSQNFGPTINQPSTLINTVSVSNNGDVLMTESTVPDALLRRTHSEAELHVSIQEDTKHFTIPKSQTLPPLSESSGWNSRERGAFRVKATFADEKIRFSLQPIWGFRDLQLEIARRFNLNDVSNIVLKYLDDEGEWVVLACDADLEECKDLHRSSQSRTIRLSLFQASPLNLANTFGNNSPS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00085 870 PANTHER PROTEIN NLP8 67 855 IPR045012 GO:0003700
Gabi4302g00085 870 Pfam PB1 domain 773 854 IPR000270 GO:0005515
Gabi4302g00085 870 SUPERFAMILY CAD & PB1 domains 762 857 - -
Gabi4302g00085 870 MobiDBLite consensus disorder prediction 429 461 - -
Gabi4302g00085 870 ProSiteProfiles PB1 domain profile. 772 855 IPR000270 GO:0005515
Gabi4302g00085 870 MobiDBLite consensus disorder prediction 532 564 - -
Gabi4302g00085 870 CDD PB1_NLP 773 854 IPR034891 -
Gabi4302g00085 870 Pfam RWP-RK domain 568 615 IPR003035 -
Gabi4302g00085 870 ProSiteProfiles RWP-RK domain profile. 554 635 IPR003035 -
Gabi4302g00085 870 Gene3D - 771 857 - -
Gabi4302g00085 870 SMART PB1_new 772 855 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00085 Gabi-Chr4302 753559 756749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00085 9 866 NLP Transcription Factor Family AT4G35270 45.124 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi4302g00085 PB1 7.3e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00085 - - aip:107633985 1042.34