Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00084 ATGACGGATTCTGATTCTCGCGACACAGAAACACAAAACCAACATTATCATGATCATCATCATCAACAACAACAACAACATCCATATGTGGTTGCTGCTTCTTCCTCTTCTTGTTCTCGTAACCCACGAAAGAAGAGAACCAAAATGGAAGAAGGGTTGAAAACCAAGAGACCAGACCCTAGTGCTCCTAAGATCACCCGTCCCTGCACCGAATGTGGCAAGAAATTCTGGTCCTGGAAGGCTCTGTTTGGCCACATGCGATGCCATCCAGAGCGTCAGTGGAGAGGGATTAACCCACCCCCCAATTTAAAACGACAACAACATCATCATCAACAACAACAACAAATGACTCAAGAAGACCACGATGTTGCTGCTTGTCTTCTTTTACTTGCAAATGGAAAGGTTAAGGAAGATACTGTGGATTCACCGAGTCTAAGCATTTTCGAATGCTCAAGTTGCAACAAAGTGTTTGGATCACACCAGGCTCTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAAGGCTGTTTCGCCAATGCCATAACAACCAGGTTAGTTACTGACGACGACCACCACAACCACATCAACATGATGATGCTTCACGGCGGTGCAGGTACAACAACCACCACCACAACAACAACCACCACTACTAATAGCATAGGGGAAGAGCCAGATGACAGCGTGGGTCACAAATGTAGCATTTGTCTGAGGGTGTTTCCAACAGGACCAGCACTTGGTGGTCACAAGAGGTGTCATTGGGAGAAAGGGGAGAATGTGATTGAACCATCACACAGGTCTGTTGACTTGAATTTTCCTCCTCCTTCTCCTTCTCCTTCTCTTCCTCTTCCTCTTCCTCTTGATGATCATTGCCCTTCTTCTCCTCTCACTCTGGATTTGAGGTTGGGACTTTAG 912 0.4627 MTDSDSRDTETQNQHYHDHHHQQQQQHPYVVAASSSSCSRNPRKKRTKMEEGLKTKRPDPSAPKITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLKRQQHHHQQQQQMTQEDHDVAACLLLLANGKVKEDTVDSPSLSIFECSSCNKVFGSHQALGGHRASHKNVKGCFANAITTRLVTDDDHHNHINMMMLHGGAGTTTTTTTTTTTTNSIGEEPDDSVGHKCSICLRVFPTGPALGGHKRCHWEKGENVIEPSHRSVDLNFPPPSPSPSLPLPLPLDDHCPSSPLTLDLRLGL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00084 303 SUPERFAMILY beta-beta-alpha zinc fingers 147 174 IPR036236 -
Gabi4302g00084 303 Pfam C2H2-type zinc finger 230 254 - -
Gabi4302g00084 303 Pfam C2H2-type zinc finger 68 91 - -
Gabi4302g00084 303 Pfam C2H2-type zinc finger 148 171 - -
Gabi4302g00084 303 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 22 303 - -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 202 223 - -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 201 224 - -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 1 66 - -
Gabi4302g00084 303 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 1 24 - -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 269 283 - -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 25 40 - -
Gabi4302g00084 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Gabi4302g00084 303 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 264 283 - -
Gabi4302g00084 303 SMART c2h2final6 67 89 IPR013087 -
Gabi4302g00084 303 SMART c2h2final6 148 170 IPR013087 -
Gabi4302g00084 303 SMART c2h2final6 230 252 IPR013087 -
Gabi4302g00084 303 MobiDBLite consensus disorder prediction 43 61 - -
Gabi4302g00084 303 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Gabi4302g00084 303 SUPERFAMILY beta-beta-alpha zinc fingers 68 92 IPR036236 -
Gabi4302g00084 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00084 Gabi-Chr4302 734734 735645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00084 27 303 C2H2 Transcription Factor Family AT4G35280 48.993 6.37e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4302g00084 zf-C2H2_6 1.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00084 - - gmx:100792631 264.618