Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00072 ATGGGAAATTGTTGTTGCCAATCATCGTTGTTGTTCGGAGTAGGCGAGAGAGAAACTCACCCGGAAAAGGAAAATCAGCAACCCTACCGCAACCACAATCACAACGCTATCTTCTCTCAGAGTCAGAGTCAGAGTCAGAGAGAGACTATGACTGTTTCTGTGTCTGTGTCTGTAGCTGATGATCCTTCATCGTTCTCGGAGTTCTCCTTGGCAGACCTGAAAGCCGCGACAAATAATTTCAGCTCGGAGTTTATCGTTTCGGAGAGTGGAGAAAAAGCACCGAACGTGGTTTACAAGGGTCGGCTCCAGAACACGAACCAGAACCCGAACCAGAATCGCCGTTGGATTGCTGTGAAGAAGTTCAGCAAAGCTGCTTGGCCCGATCCGAAGCAATTCGTGGAAGAAGCTTCTGGCGTTGGGAAATTGCGGCATCCGAGGCTCGCTAATTTGATCGGTTACTGTTGCGATGGCGATGAGAGGCTTCTCGTTGCTGAGTATATGCCTAACGACACTCTCGCCAAGCATCTCTTCCACTGGGAAAATCAGACAATTGAGTGGGCCATGCGCTTAAGAGTTGCTCTTTATATTGCACAAGCTTTACATTATTGCAGTTCTGAGGGTCGTCCATTATATCATGACTTGAATGCTTATAGGGTTCTTTTCGATGAGGATGGTGATCCACGCCTCTCCTGCTTTGGTTTAATGAAAAACAGCAGGGATGGAAAAAGTTATAGCACGAATCTTGCTTATACGCCTCCTGAATATTTAAGAAATGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACTGTTCTTCTAGACCTCCTAAGTGGCAAGCACATCCCTCCAAGTCATGCACTTGATATGATACAGGGAAAAAACAACATGCTGTTAATGGATTCACATTTGGAGGGGAAGTTTTCTACTGAAGAAGCAACAGTAGTAGTTAGTCTTGCCTCTAAATGTTTGCAATATGAACCGCGGGAGCGGCCTGATACAAAGGATTTGGTCACAACACTTGCTCCATTGCATACAAAACCTGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAAGCTCCATCAACCCCACAACGACCTCTTTCAGCAATGGGTGAGGCTTGTTCAAGAATGGACCTCACAGCAATACACCAGATCTTGGTCGCAGCACACTACAGAGATGATGAAGGAACTAATGAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGATTTTAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTGGGAACAATGGTCTCCCCCACCGTTTTTGCAAGGCGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCGCTACGAGATGCAATGCAAGCACAATGCGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCAGTAGCTCTTGCAAAGCTGGACATGCACAAGGATGCTGCTGATATGTTAAATGAGGCAGCAGCATTGGAAGAGAAGAGGCAAAAAGGAGCGAGAGGCTCATAG 1557 0.4631 MGNCCCQSSLLFGVGERETHPEKENQQPYRNHNHNAIFSQSQSQSQRETMTVSVSVSVADDPSSFSEFSLADLKAATNNFSSEFIVSESGEKAPNVVYKGRLQNTNQNPNQNRRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVSLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVAAHYRDDEGTNEMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQKGARGS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00072 518 SUPERFAMILY TPR-like 410 512 IPR011990 GO:0005515
Gabi4302g00072 518 Pfam Protein tyrosine and serine/threonine kinase 96 342 IPR001245 GO:0004672|GO:0006468
Gabi4302g00072 518 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 41 513 IPR045845 GO:0004672|GO:0009742
Gabi4302g00072 518 Gene3D Tetratricopeptide repeat domain 407 517 IPR011990 GO:0005515
Gabi4302g00072 518 SUPERFAMILY Protein kinase-like (PK-like) 65 346 IPR011009 -
Gabi4302g00072 518 ProSiteProfiles Protein kinase domain profile. 83 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4302g00072 518 FunFam probable serine/threonine-protein kinase At5g41260 168 359 - -
Gabi4302g00072 518 FunFam probable serine/threonine-protein kinase At4g35230 407 516 - -
Gabi4302g00072 518 FunFam probable serine/threonine-protein kinase At4g35230 56 166 - -
Gabi4302g00072 518 Gene3D Transferase(Phosphotransferase) domain 1 168 359 - -
Gabi4302g00072 518 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00072 Gabi-Chr4302 656447 661997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00072 13 366 Glycoside Hydrolase AT3G07070 31.117 3.50e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi4302g00072 PK_Tyr_Ser-Thr 3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00072 K14500 - gmx:100808907 895.96