Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00071 ATGGGAAATTGTTGTTGCCAATCATCGTTGTTGTTCGGAGTAGGCGAGAGAGAAACTCACCCGGAAAAGGAAAATCAGCAACCCTACCGCAACCACAATCACAACGCTATCTTCTCTCAGAGTCAGAGTCAGAGTCAGAGAGAGACTATGACTGTTTCTGTGTCTGTGTCTGTAGCTGATGATCCTTCATCGTTCTCGGAGTTCTCCTTGGCAGACCTGAAAGCCGCGACAAATAATTTCAGCTCGGAGTTTATCGTTTCGGAGAGTGGAGAAAAAGCACCGAACGTGGTTTACAAGGGTCGGCTCCAGAACACGAACCAGAACCCGAACCAGAATCGCCGTTGGATTGCTGTGAAGAAGTTCAGCAAAGCTGCTTGGCCCGATCCGAAGCAATTCGTGGAAGAAGCTTCTGGCGTTGGGAAATTGCGGCATCCGAGGCTCGCTAATTTGATCGGTTACTGTTGCGATGGCGATGAGAGGCTTCTCGTTGCTGAGTATATGCCTAACGACACTCTCGCCAAGCATCTCTTCCACTGGGAAAATCAGACAATTGAGTGGGCCATGCGCTTAAGAGTTGCTCTTTATATTGCACAAGCTTTACATTATTGCAGTTCTGAGGGTCGTCCATTATATCATGACTTGAATGCTTATAGGGTTCTTTTCGATGAGGATGGTGATCCACGCCTCTCCTGCTTTGGTTTAATGAAAAACAGCAGGGATGGAAAAAGTTATAGCACGAATCTTGCTTATACGCCTCCTGAATATTTAAGAAATGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACTGTTCTTCTAGACCTCCTAAGTGGCAAGCACATCCCTCCAAGTCATGGAAAAAACAACATGCTGTTAATGGATTCACATTTGGAGGGGAAGTTTTCTACTGAAGAAGCAACAGTAGTAGTTAGTCTTGCCTCTAAATGTTTGCAATATGAACCGCGGGAGCGGCCTGATACAAAGGATTTGGTCACAACACTTGCTCCATTGCATACAAAACCTGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAAGCTCCATCAACCCCACAACGACCTCTTTCAGCAATGGGTGAGGCTTGTTCAAGAATGGACCTCACAGCAATACACCAGATCTTGGTCGCAGCACACTACAGAGATGATGAAGGAACTAATGAGTTGTCGTTCCAGGAGTGGACTCAGCAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGATTTTAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTGGGAACAATGGTCTCCCCCACCGTTTTTGCAAGGCGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCGCTACGAGATGCAATGCAAGCACAATGCGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCAGTAGCTCTTGCAAAGCTGGACATGCACAAGGATGCTGCTGATATGTTAAATGAGGCAGCAGCATTGGAAGAGAAGAGGCAAAAAGGAGCGAGAGGCTCATAG 1566 0.4655 MGNCCCQSSLLFGVGERETHPEKENQQPYRNHNHNAIFSQSQSQSQRETMTVSVSVSVADDPSSFSEFSLADLKAATNNFSSEFIVSESGEKAPNVVYKGRLQNTNQNPNQNRRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHGKNNMLLMDSHLEGKFSTEEATVVVSLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVAAHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQKGARGS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00071 521 Gene3D Transferase(Phosphotransferase) domain 1 168 353 - -
Gabi4302g00071 521 SUPERFAMILY Protein kinase-like (PK-like) 65 340 IPR011009 -
Gabi4302g00071 521 ProSiteProfiles Protein kinase domain profile. 83 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4302g00071 521 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 41 516 IPR045845 GO:0004672|GO:0009742
Gabi4302g00071 521 Gene3D Tetratricopeptide repeat domain 410 520 IPR011990 GO:0005515
Gabi4302g00071 521 Pfam Protein tyrosine and serine/threonine kinase 96 336 IPR001245 GO:0004672|GO:0006468
Gabi4302g00071 521 FunFam probable serine/threonine-protein kinase At4g35230 410 519 - -
Gabi4302g00071 521 FunFam probable serine/threonine-protein kinase At4g35230 56 166 - -
Gabi4302g00071 521 SUPERFAMILY TPR-like 413 515 IPR011990 GO:0005515
Gabi4302g00071 521 FunFam probable serine/threonine-protein kinase At5g41260 168 353 - -
Gabi4302g00071 521 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00071 Gabi-Chr4302 656447 661997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00071 13 360 Glycoside Hydrolase AT3G07070 31.117 5.56e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi4302g00071 PK_Tyr_Ser-Thr 6.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00071 K14500 - gmx:100808907 905.59