Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00068 ATGATTCCCCAATCCAGAAAACCTACCCTCTCCTCGCTGCAAATACCAGCATGGTCACTGGATATTGCATTATCTTCTTTTGCAAAGACGGATGGTCCTTCAGTTTCAATGTCAAGTCCTGGTTCCATTAGAGGACTTCCCCCAAGGCCAAATTCAGCTAAAGTCAGATCTTCCATGAGAAGTTTACTTCCCCAGAGAAGCTTCAGGACAAAAACTTGTTCCCCTGATACTGAAAGGACAGTTCTTGTAGTTCCTGATACTCCCCCATCAGATGCTCCTTTGGATAAACCTTCCACTTCGAGGTCGTTGTTGCTTAATAATAAGGTCTTCTTCTCCCCATCAGCAAAAGCTGCACATTCATTACCAGTTACTCCAATTGCAACTTCAGGTGCAGAGAATGTACACGGAAGACATCCACTGTGTGATTCTGGTTTAAGGACAATGGAAGTTCAGCAGCATATGACTCGATCATTTTCAGTTCCAGTTAATGGCAAAGCCACTAAGTTAAAGCGTACAGATTCTAGGGGACTGATTCGTGTAATTTCAGCAAAACCACATCTTGAAACTGTTGGTGGAGCCTCAACTGATGATGCTTCGGTTCCAGAGATTGCCATTGAAGATGATACTGAGGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGATTACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCTGTAAAGTGGTTTAGTATTAAAGGAAACAGAACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCAAACTGCTGCTAGGCAGCCATCAAATGTGCCACAACAGAGAGAAATAGCTTATTACAGGATCTGGCAGGATGTACCAGTGCTTATCTTGGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGCAACTACTGGTTTCAGATTTGGGTCCTCGTGCTATTGCCATTGCATTACCTTTCTCCTGCGTTTTAGGTTTCCTTTCCTCTATGATTGCGTCAACCATGGTGAGCAGGAGCTACGTGTGGGCTTATGCTTGCTTCCAGTTTGCAATTCTGATCATGTTTGCTCATGTATTTTATACTATTCTTGATTTCAATGCAATTCTCTCCATTCTCCTTTCCTCATTCACTGGATTTGGGATTGCAATCAGTATGAATTCTCTCATCATGGAATATATTAGATGGAGAGCAAGTAGGCAGATTCGATCTTCAAATGAGAATGTTAACAGGACAGAGCAGCAGCGCCGTGACCATGTACAACAACAGGAGCAGGAAGATCAAGGACAGCATCATCAATGA 1365 0.43 MIPQSRKPTLSSLQIPAWSLDIALSSFAKTDGPSVSMSSPGSIRGLPPRPNSAKVRSSMRSLLPQRSFRTKTCSPDTERTVLVVPDTPPSDAPLDKPSTSRSLLLNNKVFFSPSAKAAHSLPVTPIATSGAENVHGRHPLCDSGLRTMEVQQHMTRSFSVPVNGKATKLKRTDSRGLIRVISAKPHLETVGGASTDDASVPEIAIEDDTEDIPEEEAVCRICLVELGEGGITLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIYNPQTAARQPSNVPQQREIAYYRIWQDVPVLILVSMLAYFCFLEQLLVSDLGPRAIAIALPFSCVLGFLSSMIASTMVSRSYVWAYACFQFAILIMFAHVFYTILDFNAILSILLSSFTGFGIAISMNSLIMEYIRWRASRQIRSSNENVNRTEQQRRDHVQQQEQEDQGQHHQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00068 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 274 IPR013083 -
Gabi4302g00068 454 ProSiteProfiles Zinc finger RING-CH-type profile. 211 273 IPR011016 GO:0008270
Gabi4302g00068 454 CDD RING_CH-C4HC3_MARCH 219 267 - -
Gabi4302g00068 454 Pfam RING-variant domain 219 266 IPR011016 GO:0008270
Gabi4302g00068 454 MobiDBLite consensus disorder prediction 426 454 - -
Gabi4302g00068 454 SUPERFAMILY RING/U-box 215 270 - -
Gabi4302g00068 454 Coils Coil 423 443 - -
Gabi4302g00068 454 PANTHER OS02G0165000 PROTEIN 4 436 - -
Gabi4302g00068 454 SMART ringv_2 218 267 IPR011016 GO:0008270
Gabi4302g00068 454 MobiDBLite consensus disorder prediction 431 454 - -
Gabi4302g00068 454 MobiDBLite consensus disorder prediction 30 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00068 Gabi-Chr4302 632480 638460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00068 205 273 C3H Transcription Factor Family AT2G37950 45.833 4.06e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00068 - - gmx:100798208 702.975