Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00065 ATGGAGAATCGTGAGAGAAGTGGAAGGATCGTAGAGTTCGCATGTCACAATTTGCAGTTGGCGGAATATAATATATTATGGTGTGTGGGCATTGGATGCTGTAACTGTAACTACAGTTTTGCCAAAGTGTTTCCTTGGTCTGATAATTTGATGGAAAAGATAGGTGCTGAGCTTCAAAGTGATGCTGATTTTGTGTCAGATCCTGCTCAGACATGTTCTGGAAATGAAAAAGGTGAGAATGCCTCCTTGATTATGATTCCCCAATCCAGAAAACCTACCCTCTCCTCGCTGCAAATACCAGCATGGTCACTGGATATTGCATTATCTTCTTTTGCAAAGACGGATGGTCCTTCAGTTTCAATGTCAAGTCCTGGTTCCATTAGAGGACTTCCCCCAAGGCCAAATTCAGCTAAAGTCAGATCTTCCATGAGAAGTTTACTTCCCCAGAGAAGCTTCAGGACAAAAACTTGTTCCCCTGATACTGAAAGGACAGTTCTTGTAGTTCCTGATACTCCCCCATCAGATGCTCCTTTGGATAAACCTTCCACTTCGAGGTCGTTGTTGCTTAATAATAAGGTCTTCTTCTCCCCATCAGCAAAAGCTGCACATTCATTACCAGTTACTCCAATTGCAACTTCAGGTGCAGAGAATGTACACGGAAGACATCCACTGTGTGATTCTGGTTTAAGGACAATGGAAGTTCAGCAGCATATGACTCGATCATTTTCAGTTCCAGTTAATGGCAAAGCCACTAAGTTAAAGCGTACAGATTCTAGGGGACTGATTCGTGTAATTTCAGCAAAACCACATCTTGAAACTGTTGGTGGAGCCTCAACTGATGATGCTTCGGTTCCAGAGATTGCCATTGAAGATGATACTGAGGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGATTACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCTGTAAAGTGGTTTAGTATTAAAGGAAACAGAACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCAAACTGCTGCTAGGCAGCCATCAAATGTGCCACAACAGAGAGAAATAGCTTATTACAGGATCTGGCAGGATGTACCAGTGCTTATCTTGGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGCAACTACTGTTTACCAGGTTTCAGATTTGGGTCCTCGTGCTATTGCCATTGCATTACCTTTCTCCTGCGTTTTAG 1299 0.4288 MENRERSGRIVEFACHNLQLAEYNILWCVGIGCCNCNYSFAKVFPWSDNLMEKIGAELQSDADFVSDPAQTCSGNEKGENASLIMIPQSRKPTLSSLQIPAWSLDIALSSFAKTDGPSVSMSSPGSIRGLPPRPNSAKVRSSMRSLLPQRSFRTKTCSPDTERTVLVVPDTPPSDAPLDKPSTSRSLLLNNKVFFSPSAKAAHSLPVTPIATSGAENVHGRHPLCDSGLRTMEVQQHMTRSFSVPVNGKATKLKRTDSRGLIRVISAKPHLETVGGASTDDASVPEIAIEDDTEDIPEEEAVCRICLVELGEGGITLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIYNPQTAARQPSNVPQQREIAYYRIWQDVPVLILVSMLAYFCFLEQLLFTRFQIWVLVLLPLHYLSPAF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00065 432 ProSiteProfiles Zinc finger RING-CH-type profile. 295 357 IPR011016 GO:0008270
Gabi4302g00065 432 CDD RING_CH-C4HC3_MARCH 303 351 - -
Gabi4302g00065 432 MobiDBLite consensus disorder prediction 114 144 - -
Gabi4302g00065 432 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Gabi4302g00065 432 SUPERFAMILY RING/U-box 299 354 - -
Gabi4302g00065 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 358 IPR013083 -
Gabi4302g00065 432 PANTHER OS02G0165000 PROTEIN 78 416 - -
Gabi4302g00065 432 Pfam RING-variant domain 303 350 IPR011016 GO:0008270
Gabi4302g00065 432 SMART ringv_2 302 351 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00065 Gabi-Chr4302 632420 638143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00065 314 417 C3H Transcription Factor Family AT5G59000 33.645 2.09e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00065 - - gmx:100789461 561.992