Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00054 ATGGAGGAGCTGCAACAGCTTCTAAGCATGGGTTTCCCGGACGAGTTGGCCGCACAAGCCTTGGCTGCTACCGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAACCCAACACTAACTCTTCATTTCAGCCAAAGCTCGATCGTTTCTTCCATTCCCAATCCCCAACCACACCCCAATCACAACAAGAACAAGAACAAGAACAAGACGAATCAACCCCATCATCCAAACGCCTTAAGTCATTACCATCCACTTGTCATTCTCAACAACAACAACAACAAAAGTCTTCTTCTTTCTTCTTCAATCGTCCCAAGACTCAAGACAAGAAACACACTCACATTCACGAACCCTTATACGAGAGGTTGCGTCCCAGAACATTGGACGACGTCGTTGGCCAGGAGCATCTCCTCGCAACCAATTCCCTTCTTCGTTCTGCAATCCAACGCAATCGTCTCCCTTCAATCCTCTTCTGGGGTCCACCTGGAACTGGTAAGACCACTATTGCAAAAGCCATTGTAAATTCATCAACTTCAACTTGTTATCGCTTTGTCTCCTTATCTGCTGTCACTAGTGGCGTTAAAGATGTGAGGGATGCTGTTGATGAAGCTAGAAAAATCAGGGTTAAAACCAACCAAACAACTGTTCTCTTTGTTGATGAGGTTCACAGGTTCAATAAGTCTCAACAGGACTCTTTCTTACCCTTCATTGAAGATGGAAGCATTGTGTTCATTGGTGCCACTACTGAGAACCCTTCTTTCCATTTGATTACTCCTCTCTTGTCTCGCTGCCGTGTCCTTACACTTAACCCTCTTCAGCCCCACCATCTTGCTTTGCTTATAAACCGGGCTATTAGTGACTTGGACAAAGGTTTGATGAAAAGCGTTGGTTTTGAAGTTGATGTCAATGTGAGTGAGGATGTTGTTGATTTTATAGCTAACAATTGTGATGGGGATGCTCGGGTGGCCTTGAATGCCTTGGAGATTGCTGCTGTTACTGCTGCTGCACGGATACAACATGTTCAGCAGCCTAATCAAAAGGAAGAACAAGGCATGGATCATCTTAACACAAATGAGGAAAACAAGGTTGGCTCTGCTGCTGCTGTTGTTACTCTTGATGATGCAAAGGAGGCACTTCAGTGTAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCATTATAATCTAATCAGTGCGCTGCACAAATCAATGAGGGGAAGTGATGCAAATGCAGCAATCTATTGGTTGGCAAGAATGTTAAAAGGAGGTGAAGAGCCTCTTTACATTGCACGTAGACTCATAAGGTTTGCAAGCGAGGATGTTGGTTTGGCTGATCCATCAGCTCTTACTCAGGCTGTTTCCTGCTACCAAGCTTGCCACTTTTTGGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCTCCTAAGTCTGTCTCAGTTTATCGAGCAATAGAAGCCGCTCAGAAGGCGGTAAGAGAATCAGTGGGACAGAATGAGGGGGTGCCTCTTCATCTGAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATACATATACCCTCCTGACAACCCCTCCTCAACCCAGAGCTACTTGCCACCCTCTCTTCAAGGGTACAAGTTCCTCGATTGGCCTGATAGGAATCCCTCCGATGGATAA 1701 0.4586 MEELQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNTNSSFQPKLDRFFHSQSPTTPQSQQEQEQEQDESTPSSKRLKSLPSTCHSQQQQQQKSSSFFFNRPKTQDKKHTHIHEPLYERLRPRTLDDVVGQEHLLATNSLLRSAIQRNRLPSILFWGPPGTGKTTIAKAIVNSSTSTCYRFVSLSAVTSGVKDVRDAVDEARKIRVKTNQTTVLFVDEVHRFNKSQQDSFLPFIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLINRAISDLDKGLMKSVGFEVDVNVSEDVVDFIANNCDGDARVALNALEIAAVTAAARIQHVQQPNQKEEQGMDHLNTNEENKVGSAAAVVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLKGGEEPLYIARRLIRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYRAIEAAQKAVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQSYLPPSLQGYKFLDWPDRNPSDG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00054 566 SMART uba_6 2 38 IPR015940 -
Gabi4302g00054 566 PRINTS CbxX/CfqX superfamily signature 207 226 IPR000641 GO:0005524
Gabi4302g00054 566 PRINTS CbxX/CfqX superfamily signature 158 173 IPR000641 GO:0005524
Gabi4302g00054 566 PRINTS CbxX/CfqX superfamily signature 322 334 IPR000641 GO:0005524
Gabi4302g00054 566 SUPERFAMILY post-AAA+ oligomerization domain-like 393 561 IPR008921 GO:0003677|GO:0006260
Gabi4302g00054 566 FunFam Replication-associated recombination protein A 111 274 - -
Gabi4302g00054 566 MobiDBLite consensus disorder prediction 39 105 - -
Gabi4302g00054 566 SMART AAA_5 155 275 IPR003593 GO:0016887
Gabi4302g00054 566 Gene3D - 383 486 - -
Gabi4302g00054 566 MobiDBLite consensus disorder prediction 80 105 - -
Gabi4302g00054 566 SUPERFAMILY UBA-like 3 42 IPR009060 GO:0005515
Gabi4302g00054 566 Gene3D - 1 50 - -
Gabi4302g00054 566 Pfam ATPase family associated with various cellular activities (AAA) 159 269 IPR003959 GO:0005524|GO:0016887
Gabi4302g00054 566 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 39 IPR015940 -
Gabi4302g00054 566 Pfam MgsA AAA+ ATPase C terminal 409 556 IPR021886 -
Gabi4302g00054 566 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 562 - -
Gabi4302g00054 566 MobiDBLite consensus disorder prediction 39 73 - -
Gabi4302g00054 566 FunFam AAA-type ATPase family protein 275 351 - -
Gabi4302g00054 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 347 IPR027417 -
Gabi4302g00054 566 CDD HLD_clamp_RarA 275 383 - -
Gabi4302g00054 566 Pfam AAA C-terminal domain 304 408 IPR032423 -
Gabi4302g00054 566 CDD AAA 135 268 - -
Gabi4302g00054 566 Gene3D - 109 273 IPR027417 -
Gabi4302g00054 566 Gene3D - 487 564 - -
Gabi4302g00054 566 FunFam Putative AAA family ATPase 383 486 - -
Gabi4302g00054 566 Pfam UBA/TS-N domain 2 36 IPR015940 -
Gabi4302g00054 566 Gene3D - 275 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00054 Gabi-Chr4302 546532 548571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00054 121 331 Core DNA Replication Machinery Family AT1G77470 26.267 2.77e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00054 K07478 - gmx:100799257 848.966