Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00053 ATGGAGGAGCTGCAACAGCTTCTAAGCATGGGTTTCCCGGACGAGTTGGCCGCACAAGCCTTGGCTGCTACCGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAACCCAACACTAACTCTTCATTTCAGCCAAAGCTCGATCGTTTCTTCCATTCCCAATCCCCAACCACACCCCAATCACAACAAGAACAAGAACAAGAACAAGACGAATCAACCCCATCATCCAAACGCCTTAAGTCATTACCATCCACTTGTCATTCTCAACAACAACAACAACAAAAGTCTTCTTCTTTCTTCTTCAATCGTCCCAAGACTCAAGACAAGAAACACACTCACATTCACGAACCCTTATACGAGAGGTTGCGTCCCAGAACATTGGACGACGTCGTTGGCCAGGAGCATCTCCTCGCAACCAATTCCCTTCTTCGTTCTGCAATCCAACGCAATCGTCTCCCTTCAATCCTCTTCTGGGGTCCACCTGGAACTGGTAAGACCACTATTGCAAAAGCCATTGTAAATTCATCAACTTCAACTTGTTATCGCTTTGTCTCCTTATCTGCTGTCACTAGTGGCGTTAAAGATGTGAGGGATGCTGTTGATGAAGCTAGAAAAATCAGGGTTAAAACCAACCAAACAACTGTTCTCTTTGTTGATGAGGTTCACAGGTTCAATAAGTCTCAACAGGACTCTTTCTTACCCTTCATTGAAGATGGAAGCATTGTGTTCATTGGTGCCACTACTGAGAACCCTTCTTTCCATTTGATTACTCCTCTCTTGTCTCGCTGCCGTGTCCTTACACTTAACCCTCTTCAGCCCCACCATCTTGCTTTGCTTATAAACCGGGCTATTAGTGACTTGGACAAAGGTTTGATGAAAAGCGTTGGTTTTGAAGTTGATGTCAATGTGAGTGAGGATGTTGTTGATTTTATAGCTAACAATTGTGATGGGGATGCTCGGGTGGCCTTGAATGCCTTGGAGATTGCTGCTGTTACTGCTGAAAACAAGGTTGGCTCTGCTGCTGCTGTTGTTACTCTTGATGATGCAAAGGAGGCACTTCAGTGTAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCATTATAATCTAATCAGTGCGCTGCACAAATCAATGAGGGGAAGTGATGCAAATGCAGCAATCTATTGGTTGGCAAGAATGTTAAAAGGAGGTGAAGAGCCTCTTTACATTGCACGTAGACTCATAAGGTTTGCAAGCGAGGATGTTGGTTTGGCTGATCCATCAGCTCTTACTCAGGCTGTTTCCTGCTACCAAGCTTGCCACTTTTTGGGAATGCCAGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCTCCTAAGTCTGTCTCAGTTTATCGAGCAATAGAAGCCGCTCAGAAGGCGGTAAGAGAATCAGTGGGACAGAATGAGGGGGTGCCTCTTCATCTGAGGAATGCACCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATACATATACCCTCCTGACAACCCCTCCTCAACCCAGAGCTACTTGCCACCCTCTCTTCAAGGGTACAAGTTCCTCGATTGGCCTGATAGGAATCCCTCCGATGGATAA 1626 0.46 MEELQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNTNSSFQPKLDRFFHSQSPTTPQSQQEQEQEQDESTPSSKRLKSLPSTCHSQQQQQQKSSSFFFNRPKTQDKKHTHIHEPLYERLRPRTLDDVVGQEHLLATNSLLRSAIQRNRLPSILFWGPPGTGKTTIAKAIVNSSTSTCYRFVSLSAVTSGVKDVRDAVDEARKIRVKTNQTTVLFVDEVHRFNKSQQDSFLPFIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLINRAISDLDKGLMKSVGFEVDVNVSEDVVDFIANNCDGDARVALNALEIAAVTAENKVGSAAAVVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLKGGEEPLYIARRLIRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYRAIEAAQKAVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQSYLPPSLQGYKFLDWPDRNPSDG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00053 541 SMART uba_6 2 38 IPR015940 -
Gabi4302g00053 541 Gene3D - 109 273 IPR027417 -
Gabi4302g00053 541 Gene3D - 462 539 - -
Gabi4302g00053 541 SUPERFAMILY UBA-like 3 42 IPR009060 GO:0005515
Gabi4302g00053 541 Gene3D - 358 461 - -
Gabi4302g00053 541 MobiDBLite consensus disorder prediction 39 105 - -
Gabi4302g00053 541 Pfam MgsA AAA+ ATPase C terminal 384 531 IPR021886 -
Gabi4302g00053 541 Pfam UBA/TS-N domain 2 36 IPR015940 -
Gabi4302g00053 541 SMART AAA_5 155 275 IPR003593 GO:0016887
Gabi4302g00053 541 Gene3D - 1 50 - -
Gabi4302g00053 541 MobiDBLite consensus disorder prediction 80 105 - -
Gabi4302g00053 541 PRINTS CbxX/CfqX superfamily signature 207 226 IPR000641 GO:0005524
Gabi4302g00053 541 PRINTS CbxX/CfqX superfamily signature 158 173 IPR000641 GO:0005524
Gabi4302g00053 541 PRINTS CbxX/CfqX superfamily signature 322 334 IPR000641 GO:0005524
Gabi4302g00053 541 Pfam AAA C-terminal domain 304 383 IPR032423 -
Gabi4302g00053 541 Gene3D - 275 351 - -
Gabi4302g00053 541 FunFam Replication-associated recombination protein A 111 274 - -
Gabi4302g00053 541 FunFam Putative AAA family ATPase 358 461 - -
Gabi4302g00053 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 39 IPR015940 -
Gabi4302g00053 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 341 IPR027417 -
Gabi4302g00053 541 SUPERFAMILY post-AAA+ oligomerization domain-like 368 536 IPR008921 GO:0003677|GO:0006260
Gabi4302g00053 541 Pfam ATPase family associated with various cellular activities (AAA) 159 269 IPR003959 GO:0005524|GO:0016887
Gabi4302g00053 541 CDD HLD_clamp_RarA 275 358 - -
Gabi4302g00053 541 MobiDBLite consensus disorder prediction 39 73 - -
Gabi4302g00053 541 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 537 - -
Gabi4302g00053 541 CDD AAA 135 268 - -
Gabi4302g00053 541 FunFam AAA-type ATPase family protein 275 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00053 Gabi-Chr4302 546532 548571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00053 121 384 Core DNA Replication Machinery Family AT1G77470 24.373 2.40e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00053 K07478 - gmx:100799257 830.861