Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00046 ATGGCGACCATAATTCCAGAGAATGCCAACCAAACTGTTTCCTCTATGTCTGAGTGCTTCGGTGTGAGTGACTTAGACCCCTTGAACTGGGGTCTGGCAGCAGATTCACTCAAAAGTAGTCACTTTGATGAAGTAAAACGTATGGTGGCAGAGTACCGAAAGTCAGTGATCTCTCTGGGTGGGGGTGGAACACTAACTATAGGGCAGGTTGCTGCTGCTGCTGCTAATCATAACTCACAAGTTAAGGTTGAGCTCTCAGAGTCTGCAAGGGCAGGTGTTGAGGCCAGCTGCGAGTGGATCATGGAAAACATTAACAAAGGCACTCCCATTTATGGTGTTACCACCGGCTTTGGTGCTGCCTCCCACAGGCAAACCAAACAAGGCTTTGATCTTCAGAAGGAGATGGTTAGGTTTTTAAACTGCGCAATATTTGGCTATGAAACTGAGTTATCTCATACACTGCCTCGGTCAGCAACCAGAGCAACAATGCTTGTGAGGGTCAATACCCTTCTTCAAGGGTATTCAGGCATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACCACAATGTCACCCCTATCTTGCCATTACGTGGTACAATTACTGCTTCTGGTGATCTAATTCCTCTTTCCTACATTGCTGCATTGTTAAGCGGTAGGCGAAACTCCAAAGCTGTTGGACCCTCTGGAGAGTCCCTTAATGCCAAGGAAGCCTTTGATTTAGCAGGTCTACATTCTGGGTTCTTTGAGTTGAAGCCTAAGGAAGGAGTTGCCCTCGTAAATGGTACTACTGTTGGGTCTGGCGTAGCTTCTGTGGTGCTTTTTGAGGCAAACATATTAGCTTTGTTGTCAGAAGTTCTATCAGCGGTTTTTGCTGAAGTCATGCAGGGGAAGCCGGAATTTACATATCATCTTATACATAAGCTGAAGTACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTAGATGGAAGCTCTTATATCAAAAATACTAAAATGCAACAGACAGATCCATTGCAGAAGCCTAGAAAAGATCGTTATGCTCTTCAAACTTCTCCTCAGTGGCTTGGTCCACAGATCGAAGTCATCCGGTTTTCGACCAAATCAATTGAAAGGGAGATAAACTCGATGAATGACAATCCTTTGATTGATGTCACAAGGAACAGGGCTTTGAATGGTGGTAATTTCCAGGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTATTGCTTCAATTGGCAGACTCATCTTTGCCCAATTTACCGAGCTAGTCAATGACTTGTATAATAATGGGTTACCATCAAATCTCTCTGCTGGTAGAAACCCAAGTCTGGATTATGGCTTTAAGGGATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTAGCAAATCCTGTGACGAGCCATGTGCAAAGTGCTGAGCAGCATAACCAAGATGTGAACTCTTTGGGCTTAATTTCTGCTTGGAAAACTGTTGAAGCCGTTGAGATATTGAAGCTCATGTCTTCCACTTATTTGGTTGCCCTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTTAAGAACACAATCAAGAATACTGTAAGCAGAGTTGCAAAGAAGACATTAACCACAGAAGACGACGAAGAAACTAACCCATTTCTATTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATAGAGAATATGTCTTCTCCTACATTGATGATCCCTCCAATGTTACGTACCCATTGATGCCAAAACTAAAGCAAGTACTTTATGAGCAAGCACACAAGAGTGCCATTAATGAAAAGAATGTGAGCTTGTTAATTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAACGGAAGTTGAAAGTGCAAGGGTGGGTTATGAGAATGGCAATCCAGCAATTCCGAACAGAATTAAGGAATGTAGATCATACCCACTATACAAGTTTGTGAGGGAGGAGTTAAGGATAGGGTTGCTGACCGGAGAAAAGACTGTCTCACCAGATGAGGAATTTGAAAAAGTATTTACAGCGATGTGTCAAGCAAAGATTATTGACCCAATTCTGGAATGTCTCGGAGATTGGAATGGAGTTCCCATCCCTATATAA 2154 0.4271 MATIIPENANQTVSSMSECFGVSDLDPLNWGLAADSLKSSHFDEVKRMVAEYRKSVISLGGGGTLTIGQVAAAAANHNSQVKVELSESARAGVEASCEWIMENINKGTPIYGVTTGFGAASHRQTKQGFDLQKEMVRFLNCAIFGYETELSHTLPRSATRATMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIAALLSGRRNSKAVGPSGESLNAKEAFDLAGLHSGFFELKPKEGVALVNGTTVGSGVASVVLFEANILALLSEVLSAVFAEVMQGKPEFTYHLIHKLKYHPGQIEAAAIMEHILDGSSYIKNTKMQQTDPLQKPRKDRYALQTSPQWLGPQIEVIRFSTKSIEREINSMNDNPLIDVTRNRALNGGNFQGTPIGVSMDNARLAIASIGRLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKGSEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISAWKTVEAVEILKLMSSTYLVALCQAIDLRHLEEIFKNTIKNTVSRVAKKTLTTEDDEETNPFLFCEKDLLKVVDREYVFSYIDDPSNVTYPLMPKLKQVLYEQAHKSAINEKNVSLLIFEKIGAFEDELKSLLPTEVESARVGYENGNPAIPNRIKECRSYPLYKFVREELRIGLLTGEKTVSPDEEFEKVFTAMCQAKIIDPILECLGDWNGVPIPI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00046 717 CDD PAL-HAL 69 528 IPR001106 -
Gabi4302g00046 717 Pfam Aromatic amino acid lyase 65 531 IPR001106 -
Gabi4302g00046 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Gabi4302g00046 717 Gene3D Fumarase/aspartase (Central domain) 267 712 - -
Gabi4302g00046 717 Gene3D - 18 265 IPR024083 -
Gabi4302g00046 717 Gene3D - 531 652 IPR023144 -
Gabi4302g00046 717 FunFam Phenylalanine ammonia-lyase 18 265 - -
Gabi4302g00046 717 PANTHER HISTIDINE AMMONIA-LYASE 19 717 IPR001106 -
Gabi4302g00046 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Gabi4302g00046 717 NCBIfam phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00046 Gabi-Chr4302 514473 517367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00046 26 717 Monolignol Biosynthesis Gene Families AT2G37040 73.882 0.0 1079
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00046 K10775 - gmx:100787872 1222.99