Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00044 ATGGCACAACCCAACAAGCAGCTTCCCTGCGATGCCGATGGCTTCTGCATGCTCTGCAAACACAAGCCTTCATCCTCTGATACTCTCGCTTGCCGCACGTGCGCCACTCCATGGCACGTTTCTTGCCTCACCACCGTTCCCATCACCGTCGATTGGGACTGTCCCGACTGTACTTCTCACCCGGACAACAACCCCGCCCCGATTCCCGCCGGATCCGGCGGTCTCGTGTCGGAGATCCGTGCCATCGAATCGGACACTTCTCTAACTGAAAAAGAGAAGGCCAAGAAGCGCCAAGAGCTCCTTGGCGGCTCCGTTAATGCATCTCAATCTTCGGATAAGAATGTTGGTAACGGAAACGGCGTGCTTGATATCTTTGACGGAAAGTTGAACTGTTCCTTCTGCATGCAGTTACCTGATAGACCCGTGACGACGCCGTGCGGTCACAATTTTTGTTTGAAGTGCTTTGAGAAATGGATTGGTCAAGGGAAGCGCACCTGTGCTAATTGTCGCCATGACATTCCTCCTAAGATGGCGAGCCAGCCTCGCATCAATTCTCAGCTTGCCATTGCAATTCGATTGGCCAAGATTGCAAAATCTGAGGGAAGCCCCGATGCTCCGAAGGTGCATCAGTTTATTCGCAATCAGGATCGTCCAGATCAAGCTTTCACAACGGATCGAGCCAAGAAGACTGGAAAGGCGAATGCTTGCAGTGGGAAGATCTTTGTGACCATTCCTCCTGATCATTTTGGACCCATTACGGCGGAGAATGACCCTACGCGTAACCGTGGTGTTCTGGTTGGAGACACGTGGGAGGATAGGATGGAATGTCGACAATGGGGTGCTCATTTCCCTCATGTTGCTGGCATTGCTGGCCAGAGTAGCTATGGGGCTCAGTCTGTTGCGCTATCCGGTGGTTACGAGGATGATGAGGACCACGGTGAGTGGTTCCTTTATACTGGCAGTGGTGGAAGAGACCTCAGCGGCAACAAACGCACAAATAAGAAGCAGTCTTTTGATCAGAAATTTGAGAACATGAATGAGGCTTTGAGAGTTAGTTGTCATAAAGGTTATCCTGTTCGGGTAGTAAGGTCCCACAAGGAAAAGCGTTCTTCTTATGCACCAGAATCTGGAGTGAGATATGATGGAGTTTATAGAATAGAGAAGTGTTGGCGTAAAGATGGAATACAAGGTTGCAAGGTTTGCAGATACTTGTTCGTGAGATGTGACAATGAGCCCGCCCCATGGACGAGTGATGATCGTGGAGACCGCCCTCGACCACTACCGAACATTGAAGAGTTGAATGATGCAGTTGATTTAACCGAAAGGAAGAGTGCTCCATCATGGGATTATGATGAGGAAAAGGGCAGCTGGTTGTGGAAGAGACCTCAACCTGAAAGTAAGAAATTAAACCGTAAGGATGGGAAAATAGTATGCTTTAAACGAAAAGTAAAAAGTGAGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCATATCTGTCACAAGGTGATGACTTTCCCTCTTACAACACCTTGTGCTCACAACTTCTGCAAAGCCTGTCTGGAGGGTGCATTTTCTGGCCAAAGTTTCGTCCGAGACCGGGCATGTAAAGGTGGACGCACTTTGCGAGCACAGAAGAATATTATGAAATGCCCATCATGTTCAATTGACATAGCTGACTTTCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTCTAATAGAATCACTCCAGAGCCAGATGGAGGAGAACTCTGAAGAGTCTAGTTGTAAAAATGACGAAAATTCTAAGAATCTGCAAGACGGGACAGAAGTTTTAAAACCGAGTGATGATTCAAGTGAAAAAGTCCTGGAGGAAATTAACGACAATGATCTGAATCGACCCCAGAAGCGGAGGAATACTGATAGTGGCGCGGGTATGGTGAACAAAGAGGAAAATATTGATGAGGTTGAACTAGAAGACAAGGTAAAGACTAGCGAATAA 1989 0.4761 MAQPNKQLPCDADGFCMLCKHKPSSSDTLACRTCATPWHVSCLTTVPITVDWDCPDCTSHPDNNPAPIPAGSGGLVSEIRAIESDTSLTEKEKAKKRQELLGGSVNASQSSDKNVGNGNGVLDIFDGKLNCSFCMQLPDRPVTTPCGHNFCLKCFEKWIGQGKRTCANCRHDIPPKMASQPRINSQLAIAIRLAKIAKSEGSPDAPKVHQFIRNQDRPDQAFTTDRAKKTGKANACSGKIFVTIPPDHFGPITAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSSYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKKQSFDQKFENMNEALRVSCHKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKDGIQGCKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPNIEELNDAVDLTERKSAPSWDYDEEKGSWLWKRPQPESKKLNRKDGKIVCFKRKVKSESVKERLLKEFGCHICHKVMTFPLTTPCAHNFCKACLEGAFSGQSFVRDRACKGGRTLRAQKNIMKCPSCSIDIADFLQNPQVNREMMGLIESLQSQMEENSEESSCKNDENSKNLQDGTEVLKPSDDSSEKVLEEINDNDLNRPQKRRNTDSGAGMVNKEENIDEVELEDKVKTSE 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00044 662 ProSiteProfiles Zinc finger RING-type profile. 131 170 IPR001841 -
Gabi4302g00044 662 Pfam SAD/SRA domain 262 410 IPR003105 -
Gabi4302g00044 662 SUPERFAMILY PUA domain-like 233 427 IPR015947 -
Gabi4302g00044 662 SMART G9a_1 254 411 IPR003105 -
Gabi4302g00044 662 SUPERFAMILY FYVE/PHD zinc finger 9 62 IPR011011 -
Gabi4302g00044 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 609 IPR013083 -
Gabi4302g00044 662 Gene3D - 230 425 IPR036987 -
Gabi4302g00044 662 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 230 425 - -
Gabi4302g00044 662 CDD RING-HC_ORTHRUS_rpt1 129 174 IPR047498 -
Gabi4302g00044 662 Pfam RING-type zinc-finger 498 553 IPR027370 -
Gabi4302g00044 662 MobiDBLite consensus disorder prediction 644 662 - -
Gabi4302g00044 662 SUPERFAMILY RING/U-box 123 177 - -
Gabi4302g00044 662 MobiDBLite consensus disorder prediction 609 633 - -
Gabi4302g00044 662 ProSitePatterns Zinc finger RING-type signature. 513 522 IPR017907 -
Gabi4302g00044 662 Pfam Zinc finger, C3HC4 type (RING finger) 129 173 - -
Gabi4302g00044 662 MobiDBLite consensus disorder prediction 588 602 - -
Gabi4302g00044 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 197 IPR013083 -
Gabi4302g00044 662 MobiDBLite consensus disorder prediction 86 113 - -
Gabi4302g00044 662 SMART PHD_3 15 58 IPR001965 -
Gabi4302g00044 662 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 598 IPR045134 -
Gabi4302g00044 662 SUPERFAMILY RING/U-box 490 580 - -
Gabi4302g00044 662 Coils Coil 569 596 - -
Gabi4302g00044 662 MobiDBLite consensus disorder prediction 582 662 - -
Gabi4302g00044 662 ProSitePatterns Zinc finger PHD-type signature. 16 57 IPR019786 -
Gabi4302g00044 662 ProSiteProfiles Zinc finger RING-type profile. 498 556 IPR001841 -
Gabi4302g00044 662 ProSiteProfiles YDG domain profile. 259 407 IPR003105 -
Gabi4302g00044 662 SMART ring_2 498 555 IPR001841 -
Gabi4302g00044 662 SMART ring_2 131 169 IPR001841 -
Gabi4302g00044 662 SMART ring_2 16 57 IPR001841 -
Gabi4302g00044 662 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 81 198 - -
Gabi4302g00044 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00044 Gabi-Chr4302 474993 479974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00044 7 585 C2H2 Transcription Factor Family AT5G39550 62.375 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00044 K10638 - gmx:100786796 1005.36