Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00037 ATGGCGGATTCGGATAACGAATCGGGTGGGAACCCGAACGGGAAGGAGAAGGAGCAGGAACGGTTTTTGCCGATAGCGAACGTGAGCCGTATAATGAAGAAAGCGTTGCCGGCGAACGGGAAGATATCGAAGGAGGCGAAGGAGACGGTGCAGGAATGTGTGTCGGAGTTCATAAGCTTCGTAACAGGAGAGGCGTCGGATAAGTGCCAGAGAGAGAAACGGAAGACGATCAACGGCGATGATCTGTTGTGGGCCATGACCACCTTGGGTTTCGATGATTACTTGGACCCATTGAAGGTTTATCTCCACAGGTATCGCGAGATGGAAGGGGACAAGACTTATACTTCGACTTCTACTTCTACTTCTACTTCTACTTACGATGACAACGTTAATGGCATGCTTTATGCTTCTGCTGATGCTGGGTTTCATCATATGGGTATTCCTCAGAACCCACAACATGGTTCTATTGGAAGGAGGACTATGTAG 486 0.4897 MADSDNESGGNPNGKEKEQERFLPIANVSRIMKKALPANGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFDDYLDPLKVYLHRYREMEGDKTYTSTSTSTSTSTYDDNVNGMLYASADAGFHHMGIPQNPQHGSIGRRTM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00037 161 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4302g00037 161 Gene3D Histone, subunit A 11 139 IPR009072 GO:0046982
Gabi4302g00037 161 FunFam Nuclear transcription factor Y subunit B-3 11 134 - -
Gabi4302g00037 161 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Gabi4302g00037 161 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Gabi4302g00037 161 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Gabi4302g00037 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Gabi4302g00037 161 SUPERFAMILY Histone-fold 19 130 IPR009072 GO:0046982
Gabi4302g00037 161 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4302g00037 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00037 Gabi-Chr4302 413646 414646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00037 1 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.672 9.89e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4302g00037 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00037 K08065 - sind:105178550 201.06